miRNA display CGI


Results 1 - 20 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 76839 0.95 0.019035
Target:  5'- gCCGGAG-CACCGCGCGCCAAACAUAAg -3'
miRNA:   3'- -GGCCUCgGUGGCGCGCGGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 29384 0.84 0.109881
Target:  5'- gCCGGAGCUGCCGCGCGCgAGGCc--- -3'
miRNA:   3'- -GGCCUCGGUGGCGCGCGgUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 103179 0.84 0.112833
Target:  5'- cCCGGGGCCcgccccgcgcGCCGCGCGCCGGACc--- -3'
miRNA:   3'- -GGCCUCGG----------UGGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 366 0.84 0.112833
Target:  5'- cCCGGGGCCcgccccgcgcGCCGCGCGCCGGACc--- -3'
miRNA:   3'- -GGCCUCGG----------UGGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 78438 0.82 0.146312
Target:  5'- gCCGGAaggccacgacaaaGCCGCCGCGCGCCAggUAc-- -3'
miRNA:   3'- -GGCCU-------------CGGUGGCGCGCGGUuuGUauu -5'
6424 3' -56.3 NC_001847.1 + 123571 0.81 0.166902
Target:  5'- gCCGGGGCCGCCGCGagcgggGCCGGACcgGg -3'
miRNA:   3'- -GGCCUCGGUGGCGCg-----CGGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 30612 0.81 0.171233
Target:  5'- cCCGGGGCCGCCGCgcaGCGCCGcaAACGc-- -3'
miRNA:   3'- -GGCCUCGGUGGCG---CGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 51429 0.81 0.175664
Target:  5'- aCGGAGCCGcCCGCGCGC--GACAUGGa -3'
miRNA:   3'- gGCCUCGGU-GGCGCGCGguUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 496 0.8 0.189574
Target:  5'- gCGGGGCgGCCGCGCGCCAAc----- -3'
miRNA:   3'- gGCCUCGgUGGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 103309 0.8 0.189574
Target:  5'- gCGGGGCgGCCGCGCGCCAAc----- -3'
miRNA:   3'- gGCCUCGgUGGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 117209 0.8 0.199377
Target:  5'- gCCGGAGCCGCCGUccGUGuCCGAGCAc-- -3'
miRNA:   3'- -GGCCUCGGUGGCG--CGC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 129781 0.8 0.203931
Target:  5'- gCCGGAGCCugggcccggccgcGCCGCGCGaCCAGuacuACGUGAa -3'
miRNA:   3'- -GGCCUCGG-------------UGGCGCGC-GGUU----UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 129559 0.8 0.204443
Target:  5'- gUGGAGCUACCGCGCGgccaCCAGGCAUu- -3'
miRNA:   3'- gGCCUCGGUGGCGCGC----GGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 109616 0.79 0.220312
Target:  5'- gCGGAGCCGgUGCGCGCCAAccGCGc-- -3'
miRNA:   3'- gGCCUCGGUgGCGCGCGGUU--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 35505 0.79 0.220312
Target:  5'- gCGGAgGCCACggCGCGCGCCGAGCGc-- -3'
miRNA:   3'- gGCCU-CGGUG--GCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 68470 0.79 0.231466
Target:  5'- gCCGGGGCCccGCCGCGCgggcgcaagcgcGCCAGGCAg-- -3'
miRNA:   3'- -GGCCUCGG--UGGCGCG------------CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 127242 0.79 0.237219
Target:  5'- gCGGcGGCCGCCGCGCGCCccGCGc-- -3'
miRNA:   3'- gGCC-UCGGUGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 103707 0.78 0.2552
Target:  5'- gCCGGGGCCGCCGCGgcCGCCGGcCGc-- -3'
miRNA:   3'- -GGCCUCGGUGGCGC--GCGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 894 0.78 0.2552
Target:  5'- gCCGGGGCCGCCGCGgcCGCCGGcCGc-- -3'
miRNA:   3'- -GGCCUCGGUGGCGC--GCGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 81121 0.78 0.261438
Target:  5'- uCCaGAGCgCGCCGCGCGUCGGACcgGAc -3'
miRNA:   3'- -GGcCUCG-GUGGCGCGCGGUUUGuaUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.