miRNA display CGI


Results 1 - 20 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 99511 0.66 0.881958
Target:  5'- cCUGGAGUuugcgccgagccccgCGCCGCGCGCUuu-CGUu- -3'
miRNA:   3'- -GGCCUCG---------------GUGGCGCGCGGuuuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 86538 0.66 0.8718
Target:  5'- aUCGGcacGGCCGagCGCGCGCCcAAgGUAu -3'
miRNA:   3'- -GGCC---UCGGUg-GCGCGCGGuUUgUAUu -5'
6424 3' -56.3 NC_001847.1 + 47299 0.66 0.8718
Target:  5'- cCCGcGGGCCAUcaCGCcCGCC-GGCGUGAu -3'
miRNA:   3'- -GGC-CUCGGUG--GCGcGCGGuUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 38667 0.66 0.8718
Target:  5'- aCGGAGCCcUCGCGCaaGCUcAGCGa-- -3'
miRNA:   3'- gGCCUCGGuGGCGCG--CGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 132144 0.66 0.8718
Target:  5'- gCGGcgcuGCUGCCGCGCagggugggGCCGgcgAACAUAAa -3'
miRNA:   3'- gGCCu---CGGUGGCGCG--------CGGU---UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 122268 0.66 0.8718
Target:  5'- uCCGGGuCCACCGUGCuCC--ACGUGGu -3'
miRNA:   3'- -GGCCUcGGUGGCGCGcGGuuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 100331 0.66 0.8718
Target:  5'- cCCGGucGGCCugC-CGCGCCAGc----- -3'
miRNA:   3'- -GGCC--UCGGugGcGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 65748 0.66 0.8718
Target:  5'- gCCGGgcccgcaaaGGCCGCCGgcaGCGCCAccgccGCAa-- -3'
miRNA:   3'- -GGCC---------UCGGUGGCg--CGCGGUu----UGUauu -5'
6424 3' -56.3 NC_001847.1 + 64715 0.66 0.8718
Target:  5'- gCGGcaccGCCACCGaCGCGgCCGuGCAg-- -3'
miRNA:   3'- gGCCu---CGGUGGC-GCGC-GGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 64388 0.66 0.876934
Target:  5'- gCCGGuccccaacGGCCACCagguccgccuuuacGCGCGCCAcugccGGCGc-- -3'
miRNA:   3'- -GGCC--------UCGGUGG--------------CGCGCGGU-----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 2442 0.66 0.879101
Target:  5'- gCCGGcagGGCCGCCGCcuCGCCGu------ -3'
miRNA:   3'- -GGCC---UCGGUGGCGc-GCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 3990 0.66 0.879101
Target:  5'- gCCGGgcgcgcGGCC-CCGCgggGCGCCGGGCc--- -3'
miRNA:   3'- -GGCC------UCGGuGGCG---CGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 56811 0.66 0.879101
Target:  5'- aCGGGGCCG--GCGCGCCugggGGCGc-- -3'
miRNA:   3'- gGCCUCGGUggCGCGCGGu---UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 38944 0.66 0.879101
Target:  5'- cCCGG-GCCcggggGCCGCgaGCGCCAuGGCGg-- -3'
miRNA:   3'- -GGCCuCGG-----UGGCG--CGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 112401 0.66 0.879101
Target:  5'- uUGGuuGCgCGCCGCGCGgCAGuCAUAu -3'
miRNA:   3'- gGCCu-CG-GUGGCGCGCgGUUuGUAUu -5'
6424 3' -56.3 NC_001847.1 + 109904 0.66 0.879101
Target:  5'- aCCGGcAGCUcguuguccCCGCGaCGCCGAuCAUGc -3'
miRNA:   3'- -GGCC-UCGGu-------GGCGC-GCGGUUuGUAUu -5'
6424 3' -56.3 NC_001847.1 + 54458 0.66 0.879101
Target:  5'- gCCGcAGCCGCCGCcgGCGCgCAGcCGUu- -3'
miRNA:   3'- -GGCcUCGGUGGCG--CGCG-GUUuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 15882 0.66 0.879101
Target:  5'- cUCGacGAGCCGCgCGgGCGCCGc-CAUAAu -3'
miRNA:   3'- -GGC--CUCGGUG-GCgCGCGGUuuGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 97329 0.66 0.879101
Target:  5'- gUCGGcgucgcGCCcgcccgGCCGCGUGUCAAACAg-- -3'
miRNA:   3'- -GGCCu-----CGG------UGGCGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 81972 0.66 0.879101
Target:  5'- gCCGG-GUCGCaGCGC-CCGAGCAg-- -3'
miRNA:   3'- -GGCCuCGGUGgCGCGcGGUUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.