Results 1 - 20 of 611 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6424 | 3' | -56.3 | NC_001847.1 | + | 76839 | 0.95 | 0.019035 |
Target: 5'- gCCGGAG-CACCGCGCGCCAAACAUAAg -3' miRNA: 3'- -GGCCUCgGUGGCGCGCGGUUUGUAUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 103179 | 0.84 | 0.112833 |
Target: 5'- cCCGGGGCCcgccccgcgcGCCGCGCGCCGGACc--- -3' miRNA: 3'- -GGCCUCGG----------UGGCGCGCGGUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 29384 | 0.84 | 0.109881 |
Target: 5'- gCCGGAGCUGCCGCGCGCgAGGCc--- -3' miRNA: 3'- -GGCCUCGGUGGCGCGCGgUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 366 | 0.84 | 0.112833 |
Target: 5'- cCCGGGGCCcgccccgcgcGCCGCGCGCCGGACc--- -3' miRNA: 3'- -GGCCUCGG----------UGGCGCGCGGUUUGuauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 78438 | 0.82 | 0.146312 |
Target: 5'- gCCGGAaggccacgacaaaGCCGCCGCGCGCCAggUAc-- -3' miRNA: 3'- -GGCCU-------------CGGUGGCGCGCGGUuuGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 30612 | 0.81 | 0.171233 |
Target: 5'- cCCGGGGCCGCCGCgcaGCGCCGcaAACGc-- -3' miRNA: 3'- -GGCCUCGGUGGCG---CGCGGU--UUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 123571 | 0.81 | 0.166902 |
Target: 5'- gCCGGGGCCGCCGCGagcgggGCCGGACcgGg -3' miRNA: 3'- -GGCCUCGGUGGCGCg-----CGGUUUGuaUu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 51429 | 0.81 | 0.175664 |
Target: 5'- aCGGAGCCGcCCGCGCGC--GACAUGGa -3' miRNA: 3'- gGCCUCGGU-GGCGCGCGguUUGUAUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 496 | 0.8 | 0.189574 |
Target: 5'- gCGGGGCgGCCGCGCGCCAAc----- -3' miRNA: 3'- gGCCUCGgUGGCGCGCGGUUuguauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 103309 | 0.8 | 0.189574 |
Target: 5'- gCGGGGCgGCCGCGCGCCAAc----- -3' miRNA: 3'- gGCCUCGgUGGCGCGCGGUUuguauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 129781 | 0.8 | 0.203931 |
Target: 5'- gCCGGAGCCugggcccggccgcGCCGCGCGaCCAGuacuACGUGAa -3' miRNA: 3'- -GGCCUCGG-------------UGGCGCGC-GGUU----UGUAUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 117209 | 0.8 | 0.199377 |
Target: 5'- gCCGGAGCCGCCGUccGUGuCCGAGCAc-- -3' miRNA: 3'- -GGCCUCGGUGGCG--CGC-GGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 129559 | 0.8 | 0.204443 |
Target: 5'- gUGGAGCUACCGCGCGgccaCCAGGCAUu- -3' miRNA: 3'- gGCCUCGGUGGCGCGC----GGUUUGUAuu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 68470 | 0.79 | 0.231466 |
Target: 5'- gCCGGGGCCccGCCGCGCgggcgcaagcgcGCCAGGCAg-- -3' miRNA: 3'- -GGCCUCGG--UGGCGCG------------CGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 109616 | 0.79 | 0.220312 |
Target: 5'- gCGGAGCCGgUGCGCGCCAAccGCGc-- -3' miRNA: 3'- gGCCUCGGUgGCGCGCGGUU--UGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 127242 | 0.79 | 0.237219 |
Target: 5'- gCGGcGGCCGCCGCGCGCCccGCGc-- -3' miRNA: 3'- gGCC-UCGGUGGCGCGCGGuuUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 35505 | 0.79 | 0.220312 |
Target: 5'- gCGGAgGCCACggCGCGCGCCGAGCGc-- -3' miRNA: 3'- gGCCU-CGGUG--GCGCGCGGUUUGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 81121 | 0.78 | 0.261438 |
Target: 5'- uCCaGAGCgCGCCGCGCGUCGGACcgGAc -3' miRNA: 3'- -GGcCUCG-GUGGCGCGCGGUUUGuaUU- -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 103707 | 0.78 | 0.2552 |
Target: 5'- gCCGGGGCCGCCGCGgcCGCCGGcCGc-- -3' miRNA: 3'- -GGCCUCGGUGGCGC--GCGGUUuGUauu -5' |
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6424 | 3' | -56.3 | NC_001847.1 | + | 894 | 0.78 | 0.2552 |
Target: 5'- gCCGGGGCCGCCGCGgcCGCCGGcCGc-- -3' miRNA: 3'- -GGCCUCGGUGGCGC--GCGGUUuGUauu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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