miRNA display CGI


Results 1 - 20 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 366 0.84 0.112833
Target:  5'- cCCGGGGCCcgccccgcgcGCCGCGCGCCGGACc--- -3'
miRNA:   3'- -GGCCUCGG----------UGGCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 496 0.8 0.189574
Target:  5'- gCGGGGCgGCCGCGCGCCAAc----- -3'
miRNA:   3'- gGCCUCGgUGGCGCGCGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 894 0.78 0.2552
Target:  5'- gCCGGGGCCGCCGCGgcCGCCGGcCGc-- -3'
miRNA:   3'- -GGCCUCGGUGGCGC--GCGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 1018 0.66 0.8718
Target:  5'- aCCaGGccGCCGCCcgcgGCGCGCCGcAGCAg-- -3'
miRNA:   3'- -GG-CCu-CGGUGG----CGCGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1103 0.71 0.576204
Target:  5'- uCUGGAGaCGCCGCGUGCCccuGCGa-- -3'
miRNA:   3'- -GGCCUCgGUGGCGCGCGGuu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 1112 0.68 0.739926
Target:  5'- gCGGcGCCGCCGCG-GCCuccAGCAc-- -3'
miRNA:   3'- gGCCuCGGUGGCGCgCGGu--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1252 0.68 0.749734
Target:  5'- aCCGGccGCaGCgGCGCGCCGAGCc--- -3'
miRNA:   3'- -GGCCu-CGgUGgCGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 1419 0.68 0.778484
Target:  5'- aCGcGGCC-CCGCGCcccGCCAGGCAc-- -3'
miRNA:   3'- gGCcUCGGuGGCGCG---CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1503 0.66 0.856545
Target:  5'- cUCGGGGUagaGCCGCGCG-UAGGCGg-- -3'
miRNA:   3'- -GGCCUCGg--UGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1672 0.66 0.86428
Target:  5'- gCCGG-GCCGUCGCGCgGCCAGu----- -3'
miRNA:   3'- -GGCCuCGGUGGCGCG-CGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 1735 0.68 0.739926
Target:  5'- gCCGcGGCCAgCCGCGCG-CAGAgGUAc -3'
miRNA:   3'- -GGCcUCGGU-GGCGCGCgGUUUgUAUu -5'
6424 3' -56.3 NC_001847.1 + 1792 0.66 0.847798
Target:  5'- gUCGaGAGCagcagcaCGCCcuGCGCGCCGAGCGc-- -3'
miRNA:   3'- -GGC-CUCG-------GUGG--CGCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1864 0.77 0.3086
Target:  5'- gCCGGAGCgCACCGCGCgGCuUAGACGc-- -3'
miRNA:   3'- -GGCCUCG-GUGGCGCG-CG-GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1944 0.67 0.823601
Target:  5'- cUCGG-GCCGCCgGCGCucguccucGCCGGGCGg-- -3'
miRNA:   3'- -GGCCuCGGUGG-CGCG--------CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 2298 0.71 0.607074
Target:  5'- gCGGGGCCGCCGgGCGgCAugggccccAGCAc-- -3'
miRNA:   3'- gGCCUCGGUGGCgCGCgGU--------UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 2442 0.66 0.879101
Target:  5'- gCCGGcagGGCCGCCGCcuCGCCGu------ -3'
miRNA:   3'- -GGCC---UCGGUGGCGc-GCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 2586 0.66 0.8718
Target:  5'- gCGcGGCCGCCGCG-GCCGcACGc-- -3'
miRNA:   3'- gGCcUCGGUGGCGCgCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 2882 0.66 0.84046
Target:  5'- gCGGGccGCCgcGCCGCGCGUCGAGu---- -3'
miRNA:   3'- gGCCU--CGG--UGGCGCGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 2889 0.66 0.856545
Target:  5'- gCCGGGugcGUCGCCGUucGgGCCGGACGg-- -3'
miRNA:   3'- -GGCCU---CGGUGGCG--CgCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 2917 0.72 0.555816
Target:  5'- gCGGGGCCAcgguCCGCGCcGCCAGcGCGg-- -3'
miRNA:   3'- gGCCUCGGU----GGCGCG-CGGUU-UGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.