miRNA display CGI


Results 41 - 60 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 10185 0.66 0.86275
Target:  5'- gCCGGcuuuugcgcgccGCCGCCGC-CGCCGGGCc--- -3'
miRNA:   3'- -GGCCu-----------CGGUGGCGcGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 10283 0.68 0.749734
Target:  5'- aCCGcGGGCCGCgCGCuCGCCAGuCAg-- -3'
miRNA:   3'- -GGC-CUCGGUG-GCGcGCGGUUuGUauu -5'
6424 3' -56.3 NC_001847.1 + 10580 0.7 0.648462
Target:  5'- gCCGGcGGCCcccCCGCGCGCgCGGGCcgGc -3'
miRNA:   3'- -GGCC-UCGGu--GGCGCGCG-GUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 10701 0.69 0.689635
Target:  5'- cCCGGGcGCgGcCCGCGCcgGCCAAGCGc-- -3'
miRNA:   3'- -GGCCU-CGgU-GGCGCG--CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 11146 0.67 0.806029
Target:  5'- gCGGAGCUGCgGCG-GCUAAACu--- -3'
miRNA:   3'- gGCCUCGGUGgCGCgCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 11181 0.67 0.823601
Target:  5'- gCUGGGGCUGCCGCugguccGCGCgGGGCu--- -3'
miRNA:   3'- -GGCCUCGGUGGCG------CGCGgUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 11457 0.66 0.8718
Target:  5'- gCCaGcGGCUACCGUGCGCguGGCGa-- -3'
miRNA:   3'- -GGcC-UCGGUGGCGCGCGguUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 11972 0.66 0.879101
Target:  5'- gCGGcugagcGCCGCCGCGCcGUCuccgGAACGUAc -3'
miRNA:   3'- gGCCu-----CGGUGGCGCG-CGG----UUUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 12047 0.67 0.823601
Target:  5'- gCUGGAcGCC-CUGCGCGCUgcGGACGc-- -3'
miRNA:   3'- -GGCCU-CGGuGGCGCGCGG--UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 12389 0.66 0.86428
Target:  5'- cUCGGGGCgCguguggucggugACCGCGCGCacCAAACGg-- -3'
miRNA:   3'- -GGCCUCG-G------------UGGCGCGCG--GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 12466 0.68 0.769022
Target:  5'- gCGGAGCCuCCGCG-GCUucccGCGUGg -3'
miRNA:   3'- gGCCUCGGuGGCGCgCGGuu--UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 13007 0.68 0.749734
Target:  5'- gCGGcGCC-CUGCGCGCCGGcCGUc- -3'
miRNA:   3'- gGCCuCGGuGGCGCGCGGUUuGUAuu -5'
6424 3' -56.3 NC_001847.1 + 13118 0.67 0.832124
Target:  5'- gCCGGGGCgcgcgggcggCGCCGCGcCGCCugccGCGg-- -3'
miRNA:   3'- -GGCCUCG----------GUGGCGC-GCGGuu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 13248 0.66 0.8718
Target:  5'- gCGGGGCCACgCGgGCGguucgCAGGCAg-- -3'
miRNA:   3'- gGCCUCGGUG-GCgCGCg----GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 13421 0.68 0.769022
Target:  5'- aCGGGcgcGCCAgCGCGCGCCGu------ -3'
miRNA:   3'- gGCCU---CGGUgGCGCGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 14166 0.7 0.66911
Target:  5'- gCCGGGGCgGCCGCGCuaaAGGCAc-- -3'
miRNA:   3'- -GGCCUCGgUGGCGCGcggUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 14427 0.69 0.689635
Target:  5'- gCGGGGCUccGCUGUuugGCGCCGAGCGc-- -3'
miRNA:   3'- gGCCUCGG--UGGCG---CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 14895 0.74 0.44869
Target:  5'- aCGGGGCCGuCCGCGCG-CAGGCcgAc -3'
miRNA:   3'- gGCCUCGGU-GGCGCGCgGUUUGuaUu -5'
6424 3' -56.3 NC_001847.1 + 14949 0.66 0.86428
Target:  5'- gCGGGcGCCGCuCGCGCgGCCAcACc--- -3'
miRNA:   3'- gGCCU-CGGUG-GCGCG-CGGUuUGuauu -5'
6424 3' -56.3 NC_001847.1 + 15027 0.7 0.658797
Target:  5'- gCGcGAGCCGCgGC-CGCCGGGCGa-- -3'
miRNA:   3'- gGC-CUCGGUGgCGcGCGGUUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.