miRNA display CGI


Results 21 - 40 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 83856 0.66 0.878381
Target:  5'- cUCGcGGGCCACUuccccgaGCGCGCCGcGGCGc-- -3'
miRNA:   3'- -GGC-CUCGGUGG-------CGCGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 64388 0.66 0.876934
Target:  5'- gCCGGuccccaacGGCCACCagguccgccuuuacGCGCGCCAcugccGGCGc-- -3'
miRNA:   3'- -GGCC--------UCGGUGG--------------CGCGCGGU-----UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 36550 0.66 0.876207
Target:  5'- uUCGGAGauugacgcgcuggCGCCGCGCGCCuaccuGGACGc-- -3'
miRNA:   3'- -GGCCUCg------------GUGGCGCGCGG-----UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 30761 0.66 0.8718
Target:  5'- aCCGcGGcCCGCUGCaGCGCCGcGCGUc- -3'
miRNA:   3'- -GGCcUC-GGUGGCG-CGCGGUuUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 50611 0.66 0.8718
Target:  5'- gCGGGcGCCuucGCCGgGCGCaacGACAUGGa -3'
miRNA:   3'- gGCCU-CGG---UGGCgCGCGgu-UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 83672 0.66 0.8718
Target:  5'- aCUGGcGCCACCuG-GCGCUGAACcgGAg -3'
miRNA:   3'- -GGCCuCGGUGG-CgCGCGGUUUGuaUU- -5'
6424 3' -56.3 NC_001847.1 + 103831 0.66 0.8718
Target:  5'- aCCaGGccGCCGCCcgcgGCGCGCCGcAGCAg-- -3'
miRNA:   3'- -GG-CCu-CGGUGG----CGCGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 95785 0.66 0.8718
Target:  5'- gCGGAGCUGCUGuCGaCGCUGGACu--- -3'
miRNA:   3'- gGCCUCGGUGGC-GC-GCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 4297 0.66 0.8718
Target:  5'- gCCGGcGCCuugguACuCGCGCGCCGccuGCGg-- -3'
miRNA:   3'- -GGCCuCGG-----UG-GCGCGCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 2586 0.66 0.8718
Target:  5'- gCGcGGCCGCCGCG-GCCGcACGc-- -3'
miRNA:   3'- gGCcUCGGUGGCGCgCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 86538 0.66 0.8718
Target:  5'- aUCGGcacGGCCGagCGCGCGCCcAAgGUAu -3'
miRNA:   3'- -GGCC---UCGGUg-GCGCGCGGuUUgUAUu -5'
6424 3' -56.3 NC_001847.1 + 78605 0.66 0.8718
Target:  5'- cCUGGAGCUGCCGCcGCGgCAc------ -3'
miRNA:   3'- -GGCCUCGGUGGCG-CGCgGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 64715 0.66 0.8718
Target:  5'- gCGGcaccGCCACCGaCGCGgCCGuGCAg-- -3'
miRNA:   3'- gGCCu---CGGUGGC-GCGC-GGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 38052 0.66 0.8718
Target:  5'- aCCGc-GCCGCCGCG-GCUAAGCu--- -3'
miRNA:   3'- -GGCcuCGGUGGCGCgCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 27999 0.66 0.8718
Target:  5'- gCGGAgGCgGCCGCG-GCCgAAGCGg-- -3'
miRNA:   3'- gGCCU-CGgUGGCGCgCGG-UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 13248 0.66 0.8718
Target:  5'- gCGGGGCCACgCGgGCGguucgCAGGCAg-- -3'
miRNA:   3'- gGCCUCGGUG-GCgCGCg----GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1018 0.66 0.8718
Target:  5'- aCCaGGccGCCGCCcgcgGCGCGCCGcAGCAg-- -3'
miRNA:   3'- -GG-CCu-CGGUGG----CGCGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 38667 0.66 0.8718
Target:  5'- aCGGAGCCcUCGCGCaaGCUcAGCGa-- -3'
miRNA:   3'- gGCCUCGGuGGCGCG--CGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 47299 0.66 0.8718
Target:  5'- cCCGcGGGCCAUcaCGCcCGCC-GGCGUGAu -3'
miRNA:   3'- -GGC-CUCGGUG--GCGcGCGGuUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 68971 0.66 0.8718
Target:  5'- -gGGGGCgGCCG-GCGCCAgcccgggaGACAg-- -3'
miRNA:   3'- ggCCUCGgUGGCgCGCGGU--------UUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.