miRNA display CGI


Results 41 - 60 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 132144 0.66 0.8718
Target:  5'- gCGGcgcuGCUGCCGCGCagggugggGCCGgcgAACAUAAa -3'
miRNA:   3'- gGCCu---CGGUGGCGCG--------CGGU---UUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 38667 0.66 0.8718
Target:  5'- aCGGAGCCcUCGCGCaaGCUcAGCGa-- -3'
miRNA:   3'- gGCCUCGGuGGCGCG--CGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 47299 0.66 0.8718
Target:  5'- cCCGcGGGCCAUcaCGCcCGCC-GGCGUGAu -3'
miRNA:   3'- -GGC-CUCGGUG--GCGcGCGGuUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 86538 0.66 0.8718
Target:  5'- aUCGGcacGGCCGagCGCGCGCCcAAgGUAu -3'
miRNA:   3'- -GGCC---UCGGUg-GCGCGCGGuUUgUAUu -5'
6424 3' -56.3 NC_001847.1 + 38052 0.66 0.8718
Target:  5'- aCCGc-GCCGCCGCG-GCUAAGCu--- -3'
miRNA:   3'- -GGCcuCGGUGGCGCgCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 27999 0.66 0.8718
Target:  5'- gCGGAgGCgGCCGCG-GCCgAAGCGg-- -3'
miRNA:   3'- gGCCU-CGgUGGCGCgCGG-UUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 4297 0.66 0.8718
Target:  5'- gCCGGcGCCuugguACuCGCGCGCCGccuGCGg-- -3'
miRNA:   3'- -GGCCuCGG-----UG-GCGCGCGGUu--UGUauu -5'
6424 3' -56.3 NC_001847.1 + 95785 0.66 0.8718
Target:  5'- gCGGAGCUGCUGuCGaCGCUGGACu--- -3'
miRNA:   3'- gGCCUCGGUGGC-GC-GCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 82605 0.66 0.8718
Target:  5'- gCGGcGCCugugcGCCGCGCGCUGGAg---- -3'
miRNA:   3'- gGCCuCGG-----UGGCGCGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 1018 0.66 0.8718
Target:  5'- aCCaGGccGCCGCCcgcgGCGCGCCGcAGCAg-- -3'
miRNA:   3'- -GG-CCu-CGGUGG----CGCGCGGU-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 13248 0.66 0.8718
Target:  5'- gCGGGGCCACgCGgGCGguucgCAGGCAg-- -3'
miRNA:   3'- gGCCUCGGUG-GCgCGCg----GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 65924 0.66 0.871058
Target:  5'- gCGGcGCCGgcgacggcaaacgUCGCGuCGCCAAACGUc- -3'
miRNA:   3'- gGCCuCGGU-------------GGCGC-GCGGUUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 85171 0.66 0.871058
Target:  5'- gCGGAgggcgugcacgGCCugCGCguacucgGCGCCGGGCAg-- -3'
miRNA:   3'- gGCCU-----------CGGugGCG-------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 18991 0.66 0.871058
Target:  5'- cCCGcGGCCgccagcgccucggGCCGCGCGCCccAGCGc-- -3'
miRNA:   3'- -GGCcUCGG-------------UGGCGCGCGGu-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 63078 0.66 0.871058
Target:  5'- gCGGgcgcAGCUuCUGCGCGCCAAccgccgcGCGUGc -3'
miRNA:   3'- gGCC----UCGGuGGCGCGCGGUU-------UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 4652 0.66 0.867314
Target:  5'- -aGGAGCCACCGCccgacguugcuugcgGCGUCuGGCu--- -3'
miRNA:   3'- ggCCUCGGUGGCG---------------CGCGGuUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 17212 0.66 0.867314
Target:  5'- cCCGGAGUCgucgACCguaaagacgucgcgcGCGUGCCGAGCc--- -3'
miRNA:   3'- -GGCCUCGG----UGG---------------CGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 31768 0.66 0.867314
Target:  5'- gCCGGAGacgcggcgcuggcguCCGCCGCcacguuccccGCGUCGGGCAc-- -3'
miRNA:   3'- -GGCCUC---------------GGUGGCG----------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 134581 0.66 0.867314
Target:  5'- gCCGGAGacgcggcgcuggcguCCGCCGCcacguuccccGCGUCGGGCAc-- -3'
miRNA:   3'- -GGCCUC---------------GGUGGCG----------CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 107140 0.66 0.86428
Target:  5'- gCGcGGCaCGCCGCGCGCU--GCAg-- -3'
miRNA:   3'- gGCcUCG-GUGGCGCGCGGuuUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.