miRNA display CGI


Results 61 - 80 of 611 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 89509 0.66 0.86428
Target:  5'- gCGGcAGCgcgCGCCGCGCugccGCCGGGCGg-- -3'
miRNA:   3'- gGCC-UCG---GUGGCGCG----CGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 74268 0.66 0.86428
Target:  5'- gCUGGGGcCCGCgCGCGCGCUc-GCGc-- -3'
miRNA:   3'- -GGCCUC-GGUG-GCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 98738 0.66 0.86428
Target:  5'- gCCGGGGCCgggGCCGgG-GCCgGGGCAUc- -3'
miRNA:   3'- -GGCCUCGG---UGGCgCgCGG-UUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 98690 0.66 0.86428
Target:  5'- gCCGGGGCCgaaGCCG-GgGCCGAAg---- -3'
miRNA:   3'- -GGCCUCGG---UGGCgCgCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 72991 0.66 0.86428
Target:  5'- gCGGccuacGCCGCCGCG-GCCAuGCGc-- -3'
miRNA:   3'- gGCCu----CGGUGGCGCgCGGUuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 98666 0.66 0.86428
Target:  5'- gCCGGGGCCgaaGCCG-GgGCCGAAg---- -3'
miRNA:   3'- -GGCCUCGG---UGGCgCgCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 104485 0.66 0.86428
Target:  5'- gCCGG-GCCGUCGCGCgGCCAGu----- -3'
miRNA:   3'- -GGCCuCGGUGGCGCG-CGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 51909 0.66 0.86428
Target:  5'- gCCGccGCCccgGCCGCgGCGUCAAACAc-- -3'
miRNA:   3'- -GGCcuCGG---UGGCG-CGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 91158 0.66 0.86428
Target:  5'- cUCGcuGGCCA-CGCGCGCCuuAUAUAGa -3'
miRNA:   3'- -GGCc-UCGGUgGCGCGCGGuuUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 28518 0.66 0.86428
Target:  5'- cCCGGcAGCgCGCCGC-CGCCGcccggccGCGUGc -3'
miRNA:   3'- -GGCC-UCG-GUGGCGcGCGGUu------UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 75272 0.66 0.86428
Target:  5'- gCGGAgGCCGCgCGCGCgGCCcucGGCGa-- -3'
miRNA:   3'- gGCCU-CGGUG-GCGCG-CGGu--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 1672 0.66 0.86428
Target:  5'- gCCGG-GCCGUCGCGCgGCCAGu----- -3'
miRNA:   3'- -GGCCuCGGUGGCGCG-CGGUUuguauu -5'
6424 3' -56.3 NC_001847.1 + 107140 0.66 0.86428
Target:  5'- gCGcGGCaCGCCGCGCGCU--GCAg-- -3'
miRNA:   3'- gGCcUCG-GUGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 27373 0.66 0.86428
Target:  5'- uCUGGAugGUUACCGuUGCGUCAGACAc-- -3'
miRNA:   3'- -GGCCU--CGGUGGC-GCGCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 131331 0.66 0.86428
Target:  5'- cCCGGcAGCgCGCCGC-CGCCGcccggccGCGUGc -3'
miRNA:   3'- -GGCC-UCG-GUGGCGcGCGGUu------UGUAUu -5'
6424 3' -56.3 NC_001847.1 + 101355 0.66 0.86428
Target:  5'- cUCGGGGCUGCaUGCGCGCgCuuGCGc-- -3'
miRNA:   3'- -GGCCUCGGUG-GCGCGCG-GuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 43576 0.66 0.86428
Target:  5'- gCCGcGGGCgA-CGCGCGCCccAGCGUGg -3'
miRNA:   3'- -GGC-CUCGgUgGCGCGCGGu-UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 44443 0.66 0.86428
Target:  5'- aCGGGGgCGCggcgcgcggcaCGCGCGCgAGACAg-- -3'
miRNA:   3'- gGCCUCgGUG-----------GCGCGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 122779 0.66 0.86428
Target:  5'- gCCGcAGCCGCCGaCGCucccgaGCCAGGCc--- -3'
miRNA:   3'- -GGCcUCGGUGGC-GCG------CGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 14949 0.66 0.86428
Target:  5'- gCGGGcGCCGCuCGCGCgGCCAcACc--- -3'
miRNA:   3'- gGCCU-CGGUG-GCGCG-CGGUuUGuauu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.