miRNA display CGI


Results 81 - 100 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 43576 0.66 0.86428
Target:  5'- gCCGcGGGCgA-CGCGCGCCccAGCGUGg -3'
miRNA:   3'- -GGC-CUCGgUgGCGCGCGGu-UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 75272 0.66 0.86428
Target:  5'- gCGGAgGCCGCgCGCGCgGCCcucGGCGa-- -3'
miRNA:   3'- gGCCU-CGGUG-GCGCG-CGGu--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 10185 0.66 0.86275
Target:  5'- gCCGGcuuuugcgcgccGCCGCCGC-CGCCGGGCc--- -3'
miRNA:   3'- -GGCCu-----------CGGUGGCGcGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 112998 0.66 0.86275
Target:  5'- gCCGGcuuuugcgcgccGCCGCCGC-CGCCGGGCc--- -3'
miRNA:   3'- -GGCCu-----------CGGUGGCGcGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 60050 0.66 0.859664
Target:  5'- gCCGGGgcGCCGCCGacgaucuaauggugGCGCUAGugAUGg -3'
miRNA:   3'- -GGCCU--CGGUGGCg-------------CGCGGUUugUAUu -5'
6424 3' -56.3 NC_001847.1 + 104040 0.66 0.856545
Target:  5'- -aGGcauGCCACCGCGCuGCCcGGCc--- -3'
miRNA:   3'- ggCCu--CGGUGGCGCG-CGGuUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 61280 0.66 0.856545
Target:  5'- gCGGGcgccgcgccGCCGCCuaGCGCGCCAGGa---- -3'
miRNA:   3'- gGCCU---------CGGUGG--CGCGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 86093 0.66 0.856545
Target:  5'- cCCGcGGCCgugaGCUGCGCGCCAccACGg-- -3'
miRNA:   3'- -GGCcUCGG----UGGCGCGCGGUu-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 73877 0.66 0.856545
Target:  5'- gCGGcGCC-CgCGCGCGCCGcgGACGc-- -3'
miRNA:   3'- gGCCuCGGuG-GCGCGCGGU--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 69327 0.66 0.856545
Target:  5'- gCCGuGGGCCagcaGCCGCGCaGCUagcgGAGCGUc- -3'
miRNA:   3'- -GGC-CUCGG----UGGCGCG-CGG----UUUGUAuu -5'
6424 3' -56.3 NC_001847.1 + 54284 0.66 0.856545
Target:  5'- gCCGGAcgGCCucgaCGCGCGCCGc------ -3'
miRNA:   3'- -GGCCU--CGGug--GCGCGCGGUuuguauu -5'
6424 3' -56.3 NC_001847.1 + 1503 0.66 0.856545
Target:  5'- cUCGGGGUagaGCCGCGCG-UAGGCGg-- -3'
miRNA:   3'- -GGCCUCGg--UGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 113046 0.66 0.856545
Target:  5'- gCCGGcagcAGCCGCaGCGCGUCGGcGCAc-- -3'
miRNA:   3'- -GGCC----UCGGUGgCGCGCGGUU-UGUauu -5'
6424 3' -56.3 NC_001847.1 + 52733 0.66 0.856545
Target:  5'- -aGGAGCgcgCACCgGUGCGCCAGAa---- -3'
miRNA:   3'- ggCCUCG---GUGG-CGCGCGGUUUguauu -5'
6424 3' -56.3 NC_001847.1 + 2889 0.66 0.856545
Target:  5'- gCCGGGugcGUCGCCGUucGgGCCGGACGg-- -3'
miRNA:   3'- -GGCCU---CGGUGGCG--CgCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 47742 0.66 0.856545
Target:  5'- gCGGGGCCccgcCCGCGCGCaaguACu--- -3'
miRNA:   3'- gGCCUCGGu---GGCGCGCGguu-UGuauu -5'
6424 3' -56.3 NC_001847.1 + 30235 0.66 0.856545
Target:  5'- gCGGcccGCCGCCGCGCggGCCccGCGg-- -3'
miRNA:   3'- gGCCu--CGGUGGCGCG--CGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 104316 0.66 0.856545
Target:  5'- cUCGGGGUagaGCCGCGCG-UAGGCGg-- -3'
miRNA:   3'- -GGCCUCGg--UGGCGCGCgGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 34764 0.66 0.856545
Target:  5'- gCUGGcGCgGCUGCGCGCC--GCGg-- -3'
miRNA:   3'- -GGCCuCGgUGGCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 99814 0.66 0.856545
Target:  5'- gUCGGAGCgGCCGgGgGCCGc------ -3'
miRNA:   3'- -GGCCUCGgUGGCgCgCGGUuuguauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.