miRNA display CGI


Results 61 - 80 of 611 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6424 3' -56.3 NC_001847.1 + 15882 0.66 0.879101
Target:  5'- cUCGacGAGCCGCgCGgGCGCCGc-CAUAAu -3'
miRNA:   3'- -GGC--CUCGGUG-GCgCGCGGUuuGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 15994 0.66 0.84046
Target:  5'- cCCGcGGCgGCCGCGgCGCC-GACGa-- -3'
miRNA:   3'- -GGCcUCGgUGGCGC-GCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 16256 0.67 0.823601
Target:  5'- cCCGGccccGGCC-CCGUGCaCCGAGCGc-- -3'
miRNA:   3'- -GGCC----UCGGuGGCGCGcGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 16371 0.78 0.267157
Target:  5'- gCCGGuGCCgcucacACCGCGCGCCAcaaccgcGACGUGu -3'
miRNA:   3'- -GGCCuCGG------UGGCGCGCGGU-------UUGUAUu -5'
6424 3' -56.3 NC_001847.1 + 16652 0.69 0.720031
Target:  5'- gUCGGGGCC-CCGCGCcuaCAGGCGc-- -3'
miRNA:   3'- -GGCCUCGGuGGCGCGcg-GUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 17002 0.66 0.848603
Target:  5'- cUCGGGGaCGCaGCGCGCCucGCAg-- -3'
miRNA:   3'- -GGCCUCgGUGgCGCGCGGuuUGUauu -5'
6424 3' -56.3 NC_001847.1 + 17212 0.66 0.867314
Target:  5'- cCCGGAGUCgucgACCguaaagacgucgcgcGCGUGCCGAGCc--- -3'
miRNA:   3'- -GGCCUCGG----UGG---------------CGCGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 17626 0.68 0.739926
Target:  5'- cUCGucGUCGCCGCGCGUgGAGCGg-- -3'
miRNA:   3'- -GGCcuCGGUGGCGCGCGgUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 17924 0.68 0.787812
Target:  5'- -aGGuGCCGguCCGgGCGgCAGGCAUGAu -3'
miRNA:   3'- ggCCuCGGU--GGCgCGCgGUUUGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 18458 0.69 0.699828
Target:  5'- gCGGuGCCGcgcCCGCaGCGCCGGACc--- -3'
miRNA:   3'- gGCCuCGGU---GGCG-CGCGGUUUGuauu -5'
6424 3' -56.3 NC_001847.1 + 18530 0.67 0.832124
Target:  5'- gCGGGcgcGCCGCCGUccGCGCCGcagAGCGg-- -3'
miRNA:   3'- gGCCU---CGGUGGCG--CGCGGU---UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 18743 0.67 0.832124
Target:  5'- cCCGGGGCCcagagcGCCGC-CGCCGcGGC-UAAg -3'
miRNA:   3'- -GGCCUCGG------UGGCGcGCGGU-UUGuAUU- -5'
6424 3' -56.3 NC_001847.1 + 18797 0.68 0.787812
Target:  5'- uCCGcGGCgGCggCGCGCGCCAGcgcgcGCAUGGg -3'
miRNA:   3'- -GGCcUCGgUG--GCGCGCGGUU-----UGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 18863 0.71 0.617411
Target:  5'- gCGGGGCaCGCUGCcuCGCCGAGCGg-- -3'
miRNA:   3'- gGCCUCG-GUGGCGc-GCGGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 18941 0.67 0.832124
Target:  5'- uCCaGcGCCGCCGCGgCGuCCGGGCGg-- -3'
miRNA:   3'- -GGcCuCGGUGGCGC-GC-GGUUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 18991 0.66 0.871058
Target:  5'- cCCGcGGCCgccagcgccucggGCCGCGCGCCccAGCGc-- -3'
miRNA:   3'- -GGCcUCGG-------------UGGCGCGCGGu-UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 19351 0.72 0.535642
Target:  5'- gCCGGGuCUugCGCGCGCCcGACGg-- -3'
miRNA:   3'- -GGCCUcGGugGCGCGCGGuUUGUauu -5'
6424 3' -56.3 NC_001847.1 + 19398 0.71 0.564967
Target:  5'- gCCGGugugugugcccauGGCCACCaGCGCGCCcguGGCGg-- -3'
miRNA:   3'- -GGCC-------------UCGGUGG-CGCGCGGu--UUGUauu -5'
6424 3' -56.3 NC_001847.1 + 19457 0.68 0.759436
Target:  5'- gCCGGgccAGCCgcuccGCCGCGCGCUc--CAUGGg -3'
miRNA:   3'- -GGCC---UCGG-----UGGCGCGCGGuuuGUAUU- -5'
6424 3' -56.3 NC_001847.1 + 20114 0.69 0.689635
Target:  5'- cCCGGAcucGCCGCCcucauggcGCGCGgCGAACGa-- -3'
miRNA:   3'- -GGCCU---CGGUGG--------CGCGCgGUUUGUauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.