miRNA display CGI


Results 81 - 100 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 91861 0.66 0.492588
Target:  5'- cAGCCCGCGCaCGc-GCGGCgUCGCa- -3'
miRNA:   3'- cUCGGGCGCGcGUuuCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 124291 0.66 0.492588
Target:  5'- -cGCCCGcCGCGCcu--CGGCCaCGCg- -3'
miRNA:   3'- cuCGGGC-GCGCGuuucGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 59719 0.66 0.492588
Target:  5'- -cGCUCGCcUGCAGGuacguGUGGCCCGCg- -3'
miRNA:   3'- cuCGGGCGcGCGUUU-----CGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 62017 0.66 0.492588
Target:  5'- aGGUCCGCGaGCAcGGCGGCuaccuCCGCc- -3'
miRNA:   3'- cUCGGGCGCgCGUuUCGCCG-----GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 106958 0.66 0.492588
Target:  5'- cGGGCCCGgcauCGCuGCAGuccucgGGCCCGCUg -3'
miRNA:   3'- -CUCGGGC----GCG-CGUUucg---CCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 134036 0.66 0.492588
Target:  5'- gGAGgCCGCG-GCGgcGCcGCCCGCg- -3'
miRNA:   3'- -CUCgGGCGCgCGUuuCGcCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 65262 0.66 0.492588
Target:  5'- cGGGCCCGCG-GC----CGGUCCGCa- -3'
miRNA:   3'- -CUCGGGCGCgCGuuucGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 36210 0.66 0.492588
Target:  5'- aGGGgCUGCGCGCccuccuGGCGGCCuucgaCGCg- -3'
miRNA:   3'- -CUCgGGCGCGCGuu----UCGCCGG-----GCGaa -5'
6425 3' -63.2 NC_001847.1 + 36486 0.66 0.492588
Target:  5'- -uGCgCGgGCGCGuGGCGGCCCu--- -3'
miRNA:   3'- cuCGgGCgCGCGUuUCGCCGGGcgaa -5'
6425 3' -63.2 NC_001847.1 + 87406 0.66 0.492588
Target:  5'- -uGCgCGCGgGCGGGGCcccGCCCGCc- -3'
miRNA:   3'- cuCGgGCGCgCGUUUCGc--CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 105564 0.66 0.492588
Target:  5'- cGGCCCG-GCGC--GGCGGCgCCGg-- -3'
miRNA:   3'- cUCGGGCgCGCGuuUCGCCG-GGCgaa -5'
6425 3' -63.2 NC_001847.1 + 83015 0.66 0.492588
Target:  5'- cGGUCCGCugGgGCGccGcCGGCCCGCg- -3'
miRNA:   3'- cUCGGGCG--CgCGUuuC-GCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 99078 0.66 0.492588
Target:  5'- -cGUCCaGCGCGCcuguGAAcGCGGCCgGCa- -3'
miRNA:   3'- cuCGGG-CGCGCG----UUU-CGCCGGgCGaa -5'
6425 3' -63.2 NC_001847.1 + 86333 0.66 0.489773
Target:  5'- aGGCCCggacauccccgaugGCGCcgGCGAGGC-GCCCGCa- -3'
miRNA:   3'- cUCGGG--------------CGCG--CGUUUCGcCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 30236 0.66 0.483236
Target:  5'- cGGCCCGC-CGCcgcGCGGgcCCCGCg- -3'
miRNA:   3'- cUCGGGCGcGCGuuuCGCC--GGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 20005 0.66 0.483236
Target:  5'- -cGCCagaGCaGCGCAcuuccaauaGGGCGGCCCuGCg- -3'
miRNA:   3'- cuCGGg--CG-CGCGU---------UUCGCCGGG-CGaa -5'
6425 3' -63.2 NC_001847.1 + 81693 0.66 0.483236
Target:  5'- cGAGUgcucgCUGCGCGCGcuGCGGCaCGCg- -3'
miRNA:   3'- -CUCG-----GGCGCGCGUuuCGCCGgGCGaa -5'
6425 3' -63.2 NC_001847.1 + 93306 0.66 0.483236
Target:  5'- aGGCCgCGCGCGCGuguguAGGCGcgccaauCCCGCg- -3'
miRNA:   3'- cUCGG-GCGCGCGU-----UUCGCc------GGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 34119 0.66 0.483236
Target:  5'- gGAGCCUGCgGCGCcugccgcGGUGGCcgCCGCg- -3'
miRNA:   3'- -CUCGGGCG-CGCGuu-----UCGCCG--GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 106008 0.66 0.483236
Target:  5'- uGGCCguguaGUGCGCGAGGUaguccgcacugGGCCCGUa- -3'
miRNA:   3'- cUCGGg----CGCGCGUUUCG-----------CCGGGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.