miRNA display CGI


Results 61 - 80 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 45629 0.66 0.502022
Target:  5'- -cGCCCgGCG-GCAgcGCGGCgCGCg- -3'
miRNA:   3'- cuCGGG-CGCgCGUuuCGCCGgGCGaa -5'
6425 3' -63.2 NC_001847.1 + 69696 0.66 0.502022
Target:  5'- gGGGCCgGCGCuCGGuccGCGGCgCGCg- -3'
miRNA:   3'- -CUCGGgCGCGcGUUu--CGCCGgGCGaa -5'
6425 3' -63.2 NC_001847.1 + 103299 0.66 0.502022
Target:  5'- cGAGCCCggGCGCGCGAAcGUagGGuCCuCGCa- -3'
miRNA:   3'- -CUCGGG--CGCGCGUUU-CG--CC-GG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 38946 0.66 0.502022
Target:  5'- cGGGCCCGggggccgcgaGCGCcauGGCGGCggCCGCg- -3'
miRNA:   3'- -CUCGGGCg---------CGCGuu-UCGCCG--GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 44110 0.66 0.502022
Target:  5'- -cGCCUGCGCGCAAGaUGaGCCgGUUg -3'
miRNA:   3'- cuCGGGCGCGCGUUUcGC-CGGgCGAa -5'
6425 3' -63.2 NC_001847.1 + 49422 0.66 0.502022
Target:  5'- cAGCCUGCcgccgugcacugGCGCuu-GUGGCUCGCUc -3'
miRNA:   3'- cUCGGGCG------------CGCGuuuCGCCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 11462 0.66 0.502022
Target:  5'- cGGCuaCCGUGCGCGuGGCGaGCcCCGCc- -3'
miRNA:   3'- cUCG--GGCGCGCGUuUCGC-CG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 51591 0.66 0.501075
Target:  5'- aAGCCCGagaGCgGCGGcgugaacauucucAGCGGgCCGCUg -3'
miRNA:   3'- cUCGGGCg--CG-CGUU-------------UCGCCgGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 54578 0.66 0.496352
Target:  5'- cGGcCCCGCGgGCuGGGCGgcgcuggcggcgcgcGCCCGCg- -3'
miRNA:   3'- cUC-GGGCGCgCGuUUCGC---------------CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 134036 0.66 0.492588
Target:  5'- gGAGgCCGCG-GCGgcGCcGCCCGCg- -3'
miRNA:   3'- -CUCgGGCGCgCGUuuCGcCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 106958 0.66 0.492588
Target:  5'- cGGGCCCGgcauCGCuGCAGuccucgGGCCCGCUg -3'
miRNA:   3'- -CUCGGGC----GCG-CGUUucg---CCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 65262 0.66 0.492588
Target:  5'- cGGGCCCGCG-GC----CGGUCCGCa- -3'
miRNA:   3'- -CUCGGGCGCgCGuuucGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 123288 0.66 0.492588
Target:  5'- -cGCUCGCGCcgcccGCAGGGCGGCgCCa--- -3'
miRNA:   3'- cuCGGGCGCG-----CGUUUCGCCG-GGcgaa -5'
6425 3' -63.2 NC_001847.1 + 105564 0.66 0.492588
Target:  5'- cGGCCCG-GCGC--GGCGGCgCCGg-- -3'
miRNA:   3'- cUCGGGCgCGCGuuUCGCCG-GGCgaa -5'
6425 3' -63.2 NC_001847.1 + 55144 0.66 0.492588
Target:  5'- -cGCgCGCGCGUAGagccccccAGCGGCCagaCGCg- -3'
miRNA:   3'- cuCGgGCGCGCGUU--------UCGCCGG---GCGaa -5'
6425 3' -63.2 NC_001847.1 + 3986 0.66 0.492588
Target:  5'- gGGGgCCGgGCGC---GCGGCcCCGCg- -3'
miRNA:   3'- -CUCgGGCgCGCGuuuCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 4145 0.66 0.492588
Target:  5'- cGGGCCCGgcauCGCuGCAGuccucgGGCCCGCUg -3'
miRNA:   3'- -CUCGGGC----GCG-CGUUucg---CCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 31223 0.66 0.492588
Target:  5'- gGAGgCCGCG-GCGgcGCcGCCCGCg- -3'
miRNA:   3'- -CUCgGGCGCgCGUuuCGcCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 52979 0.66 0.492588
Target:  5'- aGGGCCgCGuCGCGC--AGUGGCCCa--- -3'
miRNA:   3'- -CUCGG-GC-GCGCGuuUCGCCGGGcgaa -5'
6425 3' -63.2 NC_001847.1 + 124291 0.66 0.492588
Target:  5'- -cGCCCGcCGCGCcu--CGGCCaCGCg- -3'
miRNA:   3'- cuCGGGC-GCGCGuuucGCCGG-GCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.