miRNA display CGI


Results 41 - 60 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 86300 0.66 0.511535
Target:  5'- -cGCgCCGCGCGgcCGAGGCGccCCCGCg- -3'
miRNA:   3'- cuCG-GGCGCGC--GUUUCGCc-GGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 3181 0.66 0.511535
Target:  5'- -cGCCuCGCG-GCAGgcgacggcgcAGCGGUCCGCc- -3'
miRNA:   3'- cuCGG-GCGCgCGUU----------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 102454 0.66 0.511535
Target:  5'- cGAGaCgGCGcCGCAcagcucGAGCgGGCCCGCg- -3'
miRNA:   3'- -CUCgGgCGC-GCGU------UUCG-CCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 48532 0.66 0.511535
Target:  5'- uGGCCCGC-CuCGAGGCGcGCCCGg-- -3'
miRNA:   3'- cUCGGGCGcGcGUUUCGC-CGGGCgaa -5'
6425 3' -63.2 NC_001847.1 + 66057 0.66 0.511535
Target:  5'- -cGUCCGCGCGCGGcgccagacgcGGCGaGCgCGUUa -3'
miRNA:   3'- cuCGGGCGCGCGUU----------UCGC-CGgGCGAa -5'
6425 3' -63.2 NC_001847.1 + 56473 0.66 0.508673
Target:  5'- -cGCCCGCGUGCGcacgccggcgacgcAGGCGcGCgcgaCCGCg- -3'
miRNA:   3'- cuCGGGCGCGCGU--------------UUCGC-CG----GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 58772 0.66 0.508673
Target:  5'- cGAGgCCGUGaagagGCGAccgggguccgccccGGCGGCCCGUa- -3'
miRNA:   3'- -CUCgGGCGCg----CGUU--------------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 5633 0.66 0.502022
Target:  5'- cGGuCCCGCGCGCGccaAAGa-GCCCGUc- -3'
miRNA:   3'- cUC-GGGCGCGCGU---UUCgcCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 102775 0.66 0.502022
Target:  5'- -cGCCCGCGaCGCc-GGCGcccCCCGCg- -3'
miRNA:   3'- cuCGGGCGC-GCGuuUCGCc--GGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 44110 0.66 0.502022
Target:  5'- -cGCCUGCGCGCAAGaUGaGCCgGUUg -3'
miRNA:   3'- cuCGGGCGCGCGUUUcGC-CGGgCGAa -5'
6425 3' -63.2 NC_001847.1 + 38946 0.66 0.502022
Target:  5'- cGGGCCCGggggccgcgaGCGCcauGGCGGCggCCGCg- -3'
miRNA:   3'- -CUCGGGCg---------CGCGuu-UCGCCG--GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 79125 0.66 0.502022
Target:  5'- aGGCCCGC-CGCcAGGaCGuGCCCGUc- -3'
miRNA:   3'- cUCGGGCGcGCGuUUC-GC-CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 11462 0.66 0.502022
Target:  5'- cGGCuaCCGUGCGCGuGGCGaGCcCCGCc- -3'
miRNA:   3'- cUCG--GGCGCGCGUuUCGC-CG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 53369 0.66 0.502022
Target:  5'- -cGgCCGCGgGCAccgcGAGCGcGCCUGCc- -3'
miRNA:   3'- cuCgGGCGCgCGU----UUCGC-CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 82615 0.66 0.502022
Target:  5'- -uGCgCCGCGCGCuGGAGCuuGCCgCGCUc -3'
miRNA:   3'- cuCG-GGCGCGCG-UUUCGc-CGG-GCGAa -5'
6425 3' -63.2 NC_001847.1 + 91715 0.66 0.502022
Target:  5'- cGGGCaCCGCGCGacgcgaGGCCCaGCUg -3'
miRNA:   3'- -CUCG-GGCGCGCguuucgCCGGG-CGAa -5'
6425 3' -63.2 NC_001847.1 + 103067 0.66 0.502022
Target:  5'- -cGCCCG-GCGCccAGgGGCCCGa-- -3'
miRNA:   3'- cuCGGGCgCGCGuuUCgCCGGGCgaa -5'
6425 3' -63.2 NC_001847.1 + 134127 0.66 0.502022
Target:  5'- -cGCgCCGCGgGC--GGCGGCCUGgUg -3'
miRNA:   3'- cuCG-GGCGCgCGuuUCGCCGGGCgAa -5'
6425 3' -63.2 NC_001847.1 + 116335 0.66 0.502022
Target:  5'- -uGCCCauGCGCGCGcuGGCGcGCgCCGCc- -3'
miRNA:   3'- cuCGGG--CGCGCGUu-UCGC-CG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 254 0.66 0.502022
Target:  5'- -cGCCCG-GCGCccAGgGGCCCGa-- -3'
miRNA:   3'- cuCGGGCgCGCGuuUCgCCGGGCgaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.