miRNA display CGI


Results 41 - 60 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 5633 0.66 0.502022
Target:  5'- cGGuCCCGCGCGCGccaAAGa-GCCCGUc- -3'
miRNA:   3'- cUC-GGGCGCGCGU---UUCgcCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 5661 0.68 0.378623
Target:  5'- aGGCCCGCccagGCGCGAAGgugGGCCgGCc- -3'
miRNA:   3'- cUCGGGCG----CGCGUUUCg--CCGGgCGaa -5'
6425 3' -63.2 NC_001847.1 + 5672 0.68 0.362719
Target:  5'- -cGCCguCGCGCGCGGcGGCGGCCgccaGCUc -3'
miRNA:   3'- cuCGG--GCGCGCGUU-UCGCCGGg---CGAa -5'
6425 3' -63.2 NC_001847.1 + 5825 0.72 0.208678
Target:  5'- cGGCCC-CGCGCccGGCaGGCCCGCc- -3'
miRNA:   3'- cUCGGGcGCGCGuuUCG-CCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 5880 0.81 0.053615
Target:  5'- cAGCgCUGCGCGCAGGGCGGCCgCGCc- -3'
miRNA:   3'- cUCG-GGCGCGCGUUUCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 6323 0.68 0.369818
Target:  5'- uGGCCCuuuuuguGCGCGCcu-GCGcGCCCGCc- -3'
miRNA:   3'- cUCGGG-------CGCGCGuuuCGC-CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 6698 0.66 0.483236
Target:  5'- cGGGCgCGCGCGCAGGGCcGagCGCa- -3'
miRNA:   3'- -CUCGgGCGCGCGUUUCGcCggGCGaa -5'
6425 3' -63.2 NC_001847.1 + 6982 0.67 0.445833
Target:  5'- -cGCCCGCGggccgcccaGCAgauaaaacgcgacGAGCGGCCgCGCa- -3'
miRNA:   3'- cuCGGGCGCg--------CGU-------------UUCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 7356 0.66 0.521121
Target:  5'- uAGCCgucaGCGCGCugcuGcCGGCgCCGCUg -3'
miRNA:   3'- cUCGGg---CGCGCGuuu-C-GCCG-GGCGAa -5'
6425 3' -63.2 NC_001847.1 + 7734 0.67 0.446726
Target:  5'- aGGGCgCGgGCGCGGaggcGGCGGCCaggGCa- -3'
miRNA:   3'- -CUCGgGCgCGCGUU----UCGCCGGg--CGaa -5'
6425 3' -63.2 NC_001847.1 + 7897 0.69 0.325026
Target:  5'- uAGCCgCGCgggGCGCGcGGCGGCCgcCGCUUc -3'
miRNA:   3'- cUCGG-GCG---CGCGUuUCGCCGG--GCGAA- -5'
6425 3' -63.2 NC_001847.1 + 8064 0.79 0.069836
Target:  5'- cGGCCCGCGCGCAGagGGgGGCaCCGCc- -3'
miRNA:   3'- cUCGGGCGCGCGUU--UCgCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 8603 0.66 0.473048
Target:  5'- cGAGCgucagCCGCaGCGCAagccccgccggggGAGCGG-CCGCUg -3'
miRNA:   3'- -CUCG-----GGCG-CGCGU-------------UUCGCCgGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 9491 0.67 0.455712
Target:  5'- aGAGCUgCGCGcCGCGacGAGCGGaCCCGa-- -3'
miRNA:   3'- -CUCGG-GCGC-GCGU--UUCGCC-GGGCgaa -5'
6425 3' -63.2 NC_001847.1 + 9628 0.67 0.43784
Target:  5'- -cGCCCGC-CGCcgcGcCGGCCCGCc- -3'
miRNA:   3'- cuCGGGCGcGCGuuuC-GCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 10161 0.69 0.339746
Target:  5'- -cGCCCGa--GCAGGcCGGCCCGCUg -3'
miRNA:   3'- cuCGGGCgcgCGUUUcGCCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 10207 0.67 0.464794
Target:  5'- -cGCcgCCGgGCcCAGGGCGcGCCCGCUg -3'
miRNA:   3'- cuCG--GGCgCGcGUUUCGC-CGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 10236 0.7 0.283741
Target:  5'- -cGCCCccgGCGCGCcu-GCcgGGCCCGCUUu -3'
miRNA:   3'- cuCGGG---CGCGCGuuuCG--CCGGGCGAA- -5'
6425 3' -63.2 NC_001847.1 + 10570 0.68 0.370613
Target:  5'- cGGGCCCG-GCGCc-GGCGGCCCn--- -3'
miRNA:   3'- -CUCGGGCgCGCGuuUCGCCGGGcgaa -5'
6425 3' -63.2 NC_001847.1 + 10591 0.71 0.252004
Target:  5'- --cCCCGCGCGCGcGGGCcggcgccGGCCCGCg- -3'
miRNA:   3'- cucGGGCGCGCGU-UUCG-------CCGGGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.