miRNA display CGI


Results 21 - 40 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 2751 0.66 0.492588
Target:  5'- cGGCCCG-GCGC--GGCGGCgCCGg-- -3'
miRNA:   3'- cUCGGGCgCGCGuuUCGCCG-GGCgaa -5'
6425 3' -63.2 NC_001847.1 + 2903 0.68 0.370613
Target:  5'- cGAGUaCCGCGCgaGCGGGGCcacGGUCCGCg- -3'
miRNA:   3'- -CUCG-GGCGCG--CGUUUCG---CCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 3000 0.71 0.240949
Target:  5'- gGAGCCgCGCGCGCuccaccgcGucGCGGgCCGCg- -3'
miRNA:   3'- -CUCGG-GCGCGCG--------UuuCGCCgGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 3084 0.72 0.229753
Target:  5'- -cGUCCgGCGCGCAGGccGCGGCCgGCa- -3'
miRNA:   3'- cuCGGG-CGCGCGUUU--CGCCGGgCGaa -5'
6425 3' -63.2 NC_001847.1 + 3141 0.67 0.464794
Target:  5'- gGAGCCCgGCgGCGCc-GGCGGCgCgGCg- -3'
miRNA:   3'- -CUCGGG-CG-CGCGuuUCGCCG-GgCGaa -5'
6425 3' -63.2 NC_001847.1 + 3181 0.66 0.511535
Target:  5'- -cGCCuCGCG-GCAGgcgacggcgcAGCGGUCCGCc- -3'
miRNA:   3'- cuCGG-GCGCgCGUU----------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 3238 0.67 0.453006
Target:  5'- -cGCCCGCGCcgugcucgccggcgGCAGGGgcgcCGGCgCCGCg- -3'
miRNA:   3'- cuCGGGCGCG--------------CGUUUC----GCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 3288 0.67 0.43784
Target:  5'- cGAGCaCgGCGCGCAGcucGGCgagcgcggcgcgGGCgCCGCUg -3'
miRNA:   3'- -CUCG-GgCGCGCGUU---UCG------------CCG-GGCGAa -5'
6425 3' -63.2 NC_001847.1 + 3689 0.71 0.258593
Target:  5'- cGAGCCUGCGCGCAccacagguaGGcGCGGCaauCGCg- -3'
miRNA:   3'- -CUCGGGCGCGCGU---------UU-CGCCGg--GCGaa -5'
6425 3' -63.2 NC_001847.1 + 3732 0.67 0.420376
Target:  5'- cGGCCacgGCGCGCAc-GCGGCCgUGCa- -3'
miRNA:   3'- cUCGGg--CGCGCGUuuCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 3786 0.68 0.385931
Target:  5'- -cGCCCGCGCcgccgaagcgcacGCGGccgggcggcGGCGGCgCGCUg -3'
miRNA:   3'- cuCGGGCGCG-------------CGUU---------UCGCCGgGCGAa -5'
6425 3' -63.2 NC_001847.1 + 3865 0.67 0.43784
Target:  5'- cGGGCCCuccaGCG-GC--GGCGGCCCGUc- -3'
miRNA:   3'- -CUCGGG----CGCgCGuuUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 3912 0.66 0.521121
Target:  5'- cAGCgCGgGCGCcgguuGCGcGCCCGCg- -3'
miRNA:   3'- cUCGgGCgCGCGuuu--CGC-CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 3986 0.66 0.492588
Target:  5'- gGGGgCCGgGCGC---GCGGCcCCGCg- -3'
miRNA:   3'- -CUCgGGCgCGCGuuuCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 4145 0.66 0.492588
Target:  5'- cGGGCCCGgcauCGCuGCAGuccucgGGCCCGCUg -3'
miRNA:   3'- -CUCGGGC----GCG-CGUUucg---CCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 4184 0.67 0.446726
Target:  5'- uGGgCCGCGCGCcc-GUGGgCCGCg- -3'
miRNA:   3'- cUCgGGCGCGCGuuuCGCCgGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 4385 0.73 0.175809
Target:  5'- cGAGCgCGCGCGCc--GCGGCCCaggcGCUg -3'
miRNA:   3'- -CUCGgGCGCGCGuuuCGCCGGG----CGAa -5'
6425 3' -63.2 NC_001847.1 + 4620 0.73 0.175809
Target:  5'- cAGCUCG-GCGC-GGGCGGCCCGCc- -3'
miRNA:   3'- cUCGGGCgCGCGuUUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 5053 0.71 0.240949
Target:  5'- cAGCCCGCGuCGCGGucgggcGCGGCCCa--- -3'
miRNA:   3'- cUCGGGCGC-GCGUUu-----CGCCGGGcgaa -5'
6425 3' -63.2 NC_001847.1 + 5234 0.67 0.464794
Target:  5'- gGGGCgCGCGCgGCAAAGgGuuuGCCUGCg- -3'
miRNA:   3'- -CUCGgGCGCG-CGUUUCgC---CGGGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.