Results 21 - 40 of 690 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6425 | 3' | -63.2 | NC_001847.1 | + | 132249 | 0.76 | 0.121742 |
Target: 5'- -cGCUCGCGCGguAcucgacgcgcggcgcGGCGGCCCGCg- -3' miRNA: 3'- cuCGGGCGCGCguU---------------UCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 34154 | 0.76 | 0.111581 |
Target: 5'- cGAGCgCGCuGCGCGAGGCGGCUgaggCGCUg -3' miRNA: 3'- -CUCGgGCG-CGCGUUUCGCCGG----GCGAa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 94238 | 0.78 | 0.081739 |
Target: 5'- -cGCCCGCGCgGCGccgugGAGCGGCUCGCg- -3' miRNA: 3'- cuCGGGCGCG-CGU-----UUCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 39484 | 0.81 | 0.053615 |
Target: 5'- --cCCCGCGC-CAGAGCGGCCCGCg- -3' miRNA: 3'- cucGGGCGCGcGUUUCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 35219 | 0.74 | 0.159164 |
Target: 5'- -cGCCCuGCGCGCGgacgugcugcAGGCGGCCgGCg- -3' miRNA: 3'- cuCGGG-CGCGCGU----------UUCGCCGGgCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 103677 | 0.74 | 0.151386 |
Target: 5'- aGAGCaCCuccaCGCGCGGcGGCGGCCCGCg- -3' miRNA: 3'- -CUCG-GGc---GCGCGUU-UCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 69093 | 0.76 | 0.108747 |
Target: 5'- uGGCgCCGCGCGCGgacGGGCGGgCCGCg- -3' miRNA: 3'- cUCG-GGCGCGCGU---UUCGCCgGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 5880 | 0.81 | 0.053615 |
Target: 5'- cAGCgCUGCGCGCAGGGCGGCCgCGCc- -3' miRNA: 3'- cUCG-GGCGCGCGUUUCGCCGG-GCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 65727 | 0.75 | 0.136512 |
Target: 5'- aGAGCCCGCcggggcgGCGCucgagagcguGGUGGCCCGCg- -3' miRNA: 3'- -CUCGGGCG-------CGCGuu--------UCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 39443 | 0.82 | 0.044503 |
Target: 5'- cGGCCCGCGcCGCcccccgcgccAGAGCGGCCCGCg- -3' miRNA: 3'- cUCGGGCGC-GCG----------UUUCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 36990 | 0.76 | 0.108747 |
Target: 5'- cGGGCCCGCGCcgaGCGGcGGCGGCgCGCUc -3' miRNA: 3'- -CUCGGGCGCG---CGUU-UCGCCGgGCGAa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 43139 | 0.75 | 0.130085 |
Target: 5'- cGGGCCCGCGgGCGcuGC-GCCCGCa- -3' miRNA: 3'- -CUCGGGCGCgCGUuuCGcCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 33654 | 0.77 | 0.10328 |
Target: 5'- -cGCgCGCGCGCGuggccGCGGCCCGCg- -3' miRNA: 3'- cuCGgGCGCGCGUuu---CGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 61369 | 0.78 | 0.083902 |
Target: 5'- -cGCCC-CGCGCucguAGCGGCCCGCg- -3' miRNA: 3'- cuCGGGcGCGCGuu--UCGCCGGGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 77100 | 0.79 | 0.069836 |
Target: 5'- cGGCCCGCGCGCGGuAGCGGCggggCUGCUUc -3' miRNA: 3'- cUCGGGCGCGCGUU-UCGCCG----GGCGAA- -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 82700 | 0.81 | 0.055056 |
Target: 5'- cGGGCgCCGCuCGCGAAGCgGGCCCGCUUc -3' miRNA: 3'- -CUCG-GGCGcGCGUUUCG-CCGGGCGAA- -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 90775 | 0.74 | 0.163187 |
Target: 5'- -cGCCUGCGCgGCGAGG-GGCCCGUUc -3' miRNA: 3'- cuCGGGCGCG-CGUUUCgCCGGGCGAa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 106799 | 0.74 | 0.159164 |
Target: 5'- gGGGCCCGgGCGC---GCGGCcCCGCg- -3' miRNA: 3'- -CUCGGGCgCGCGuuuCGCCG-GGCGaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 85632 | 0.74 | 0.155231 |
Target: 5'- gGAGcCCCGCGCccgGCGAAGCGGCgCCGa-- -3' miRNA: 3'- -CUC-GGGCGCG---CGUUUCGCCG-GGCgaa -5' |
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6425 | 3' | -63.2 | NC_001847.1 | + | 133548 | 0.74 | 0.151386 |
Target: 5'- -uGCgCCGCGCGCuggcccGAGCGGCgCGCUg -3' miRNA: 3'- cuCG-GGCGCGCGu-----UUCGCCGgGCGAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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