miRNA display CGI


Results 41 - 60 of 690 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 14143 0.74 0.159164
Target:  5'- gGGGCCCGCGC-CuGGGCGG-CCGCUa -3'
miRNA:   3'- -CUCGGGCGCGcGuUUCGCCgGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 69093 0.76 0.108747
Target:  5'- uGGCgCCGCGCGCGgacGGGCGGgCCGCg- -3'
miRNA:   3'- cUCG-GGCGCGCGU---UUCGCCgGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 5880 0.81 0.053615
Target:  5'- cAGCgCUGCGCGCAGGGCGGCCgCGCc- -3'
miRNA:   3'- cUCG-GGCGCGCGUUUCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 122139 0.74 0.159164
Target:  5'- cGGCCgGCGCGCAGGGCG-CCgCGCg- -3'
miRNA:   3'- cUCGGgCGCGCGUUUCGCcGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 39443 0.82 0.044503
Target:  5'- cGGCCCGCGcCGCcccccgcgccAGAGCGGCCCGCg- -3'
miRNA:   3'- cUCGGGCGC-GCG----------UUUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 49219 0.72 0.221115
Target:  5'- gGGGCCCGCGggcuucguguacgucUGCGAcGCGGCUCGCc- -3'
miRNA:   3'- -CUCGGGCGC---------------GCGUUuCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 82700 0.81 0.055056
Target:  5'- cGGGCgCCGCuCGCGAAGCgGGCCCGCUUc -3'
miRNA:   3'- -CUCG-GGCGcGCGUUUCG-CCGGGCGAA- -5'
6425 3' -63.2 NC_001847.1 + 108638 0.72 0.208678
Target:  5'- cGGCCC-CGCGCccGGCaGGCCCGCc- -3'
miRNA:   3'- cUCGGGcGCGCGuuUCG-CCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 48767 0.73 0.198779
Target:  5'- -cGCCCGC-CGCc--GCGGCCCGCc- -3'
miRNA:   3'- cuCGGGCGcGCGuuuCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 129305 0.73 0.1847
Target:  5'- cGGGCCUG-GUGCAAGGCGGgCCUGCc- -3'
miRNA:   3'- -CUCGGGCgCGCGUUUCGCC-GGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 124730 0.73 0.175809
Target:  5'- cGAGgCCGCGgGCGAGGCGGagagaggaCCGCg- -3'
miRNA:   3'- -CUCgGGCGCgCGUUUCGCCg-------GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 90775 0.74 0.163187
Target:  5'- -cGCCUGCGCgGCGAGG-GGCCCGUUc -3'
miRNA:   3'- cuCGGGCGCG-CGUUUCgCCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 106799 0.74 0.159164
Target:  5'- gGGGCCCGgGCGC---GCGGCcCCGCg- -3'
miRNA:   3'- -CUCGGGCgCGCGuuuCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 61888 0.74 0.154842
Target:  5'- cGGCgUGCGCGCAcggccucGAGCGcGCCCGCg- -3'
miRNA:   3'- cUCGgGCGCGCGU-------UUCGC-CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 65727 0.75 0.136512
Target:  5'- aGAGCCCGCcggggcgGCGCucgagagcguGGUGGCCCGCg- -3'
miRNA:   3'- -CUCGGGCG-------CGCGuu--------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 132249 0.76 0.121742
Target:  5'- -cGCUCGCGCGguAcucgacgcgcggcgcGGCGGCCCGCg- -3'
miRNA:   3'- cuCGGGCGCGCguU---------------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 34154 0.76 0.111581
Target:  5'- cGAGCgCGCuGCGCGAGGCGGCUgaggCGCUg -3'
miRNA:   3'- -CUCGgGCG-CGCGUUUCGCCGG----GCGAa -5'
6425 3' -63.2 NC_001847.1 + 33654 0.77 0.10328
Target:  5'- -cGCgCGCGCGCGuggccGCGGCCCGCg- -3'
miRNA:   3'- cuCGgGCGCGCGUuu---CGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 61369 0.78 0.083902
Target:  5'- -cGCCC-CGCGCucguAGCGGCCCGCg- -3'
miRNA:   3'- cuCGGGcGCGCGuu--UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 77100 0.79 0.069836
Target:  5'- cGGCCCGCGCGCGGuAGCGGCggggCUGCUUc -3'
miRNA:   3'- cUCGGGCGCGCGUU-UCGCCG----GGCGAA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.