miRNA display CGI


Results 21 - 40 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 33654 0.77 0.10328
Target:  5'- -cGCgCGCGCGCGuggccGCGGCCCGCg- -3'
miRNA:   3'- cuCGgGCGCGCGUuu---CGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 19329 0.77 0.105708
Target:  5'- aGAGCCCGCcgcaGCGCAGcgcgcggagccgcAGCGGCuCCGCg- -3'
miRNA:   3'- -CUCGGGCG----CGCGUU-------------UCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 104909 0.77 0.105981
Target:  5'- gGGGCCCGCGCGgc-GGCGGgCCGCg- -3'
miRNA:   3'- -CUCGGGCGCGCguuUCGCCgGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 50064 0.77 0.105981
Target:  5'- cGGGUCCGCGCGCGgcGCGGaCCCGg-- -3'
miRNA:   3'- -CUCGGGCGCGCGUuuCGCC-GGGCgaa -5'
6425 3' -63.2 NC_001847.1 + 2096 0.77 0.105981
Target:  5'- gGGGCCCGCGCGgc-GGCGGgCCGCg- -3'
miRNA:   3'- -CUCGGGCGCGCguuUCGCCgGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 36990 0.76 0.108747
Target:  5'- cGGGCCCGCGCcgaGCGGcGGCGGCgCGCUc -3'
miRNA:   3'- -CUCGGGCGCG---CGUU-UCGCCGgGCGAa -5'
6425 3' -63.2 NC_001847.1 + 69093 0.76 0.108747
Target:  5'- uGGCgCCGCGCGCGgacGGGCGGgCCGCg- -3'
miRNA:   3'- cUCG-GGCGCGCGU---UUCGCCgGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 34154 0.76 0.111581
Target:  5'- cGAGCgCGCuGCGCGAGGCGGCUgaggCGCUg -3'
miRNA:   3'- -CUCGgGCG-CGCGUUUCGCCGG----GCGAa -5'
6425 3' -63.2 NC_001847.1 + 115386 0.76 0.113898
Target:  5'- cGAGCCCGCaccccgccuuccCGCuAAGCGGCCCGCc- -3'
miRNA:   3'- -CUCGGGCGc-----------GCGuUUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 115104 0.76 0.114484
Target:  5'- -uGCCCGCGCcCAGGGCGGCggCCGCa- -3'
miRNA:   3'- cuCGGGCGCGcGUUUCGCCG--GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 84041 0.76 0.120503
Target:  5'- cGAGCUCGCGCGCGAgucgcuagagcAGcCGGCCCGg-- -3'
miRNA:   3'- -CUCGGGCGCGCGUU-----------UC-GCCGGGCgaa -5'
6425 3' -63.2 NC_001847.1 + 24128 0.76 0.120503
Target:  5'- uGAGCCCGCGCGCGAAcuuGCuGCgCGCa- -3'
miRNA:   3'- -CUCGGGCGCGCGUUU---CGcCGgGCGaa -5'
6425 3' -63.2 NC_001847.1 + 132249 0.76 0.121742
Target:  5'- -cGCUCGCGCGguAcucgacgcgcggcgcGGCGGCCCGCg- -3'
miRNA:   3'- cuCGGGCGCGCguU---------------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 29436 0.76 0.121742
Target:  5'- -cGCUCGCGCGguAcucgacgcgcggcgcGGCGGCCCGCg- -3'
miRNA:   3'- cuCGGGCGCGCguU---------------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 43634 0.76 0.123306
Target:  5'- aGAGCCugcugcaggaCGCGCGCGAgggcucgGGUGGCCCGCc- -3'
miRNA:   3'- -CUCGG----------GCGCGCGUU-------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 53178 0.75 0.126815
Target:  5'- -cGCCCGCGUGauGAGCGcGCCCGCg- -3'
miRNA:   3'- cuCGGGCGCGCguUUCGC-CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 41890 0.75 0.126815
Target:  5'- cGGCCCGCGCgGCGAGGCagagguggucGGCUCGCg- -3'
miRNA:   3'- cUCGGGCGCG-CGUUUCG----------CCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 57905 0.75 0.129754
Target:  5'- -cGCCCGCGCGaccgcgcCAAguccgggcccGGCGGCCCGCg- -3'
miRNA:   3'- cuCGGGCGCGC-------GUU----------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 43139 0.75 0.130085
Target:  5'- cGGGCCCGCGgGCGcuGC-GCCCGCa- -3'
miRNA:   3'- -CUCGGGCGCgCGUuuCGcCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 86532 0.75 0.130085
Target:  5'- -cGCCCGCGUGCu-GGCGGCgCgGCUUa -3'
miRNA:   3'- cuCGGGCGCGCGuuUCGCCG-GgCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.