miRNA display CGI


Results 21 - 40 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 132553 0.78 0.079629
Target:  5'- cGGGCUCGCGUGCGGccgcGGCGGCCgCGCa- -3'
miRNA:   3'- -CUCGGGCGCGCGUU----UCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 132449 0.66 0.47397
Target:  5'- aGGGCCgGgGCGCcgcGGGCGGaCCCGg-- -3'
miRNA:   3'- -CUCGGgCgCGCGu--UUCGCC-GGGCgaa -5'
6425 3' -63.2 NC_001847.1 + 132319 0.74 0.16197
Target:  5'- cAGCCCGCcggcggaggugccgGCGCGGcuGGCGGCCgCGCUc -3'
miRNA:   3'- cUCGGGCG--------------CGCGUU--UCGCCGG-GCGAa -5'
6425 3' -63.2 NC_001847.1 + 132291 0.68 0.403341
Target:  5'- cGGCCUGgGCGCu-GGCGcGCgCGCUg -3'
miRNA:   3'- cUCGGGCgCGCGuuUCGC-CGgGCGAa -5'
6425 3' -63.2 NC_001847.1 + 132249 0.76 0.121742
Target:  5'- -cGCUCGCGCGguAcucgacgcgcggcgcGGCGGCCCGCg- -3'
miRNA:   3'- cuCGGGCGCGCguU---------------UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 132183 0.73 0.180206
Target:  5'- cGGCgCUGCGCGcCGAGGCGGCCgccgCGCUg -3'
miRNA:   3'- cUCG-GGCGCGC-GUUUCGCCGG----GCGAa -5'
6425 3' -63.2 NC_001847.1 + 132135 0.68 0.370613
Target:  5'- cGGCCCGCGaCGCGgugGAGCGcGCgCgGCUc -3'
miRNA:   3'- cUCGGGCGC-GCGU---UUCGC-CG-GgCGAa -5'
6425 3' -63.2 NC_001847.1 + 131971 0.74 0.163187
Target:  5'- -cGCCUGCcgcgagGCGCugGAGGCGGCCCGCc- -3'
miRNA:   3'- cuCGGGCG------CGCG--UUUCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 131935 0.67 0.446726
Target:  5'- cGAGCggCUGCGCGagcuGGCGGaCCGCUg -3'
miRNA:   3'- -CUCG--GGCGCGCguu-UCGCCgGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 131820 0.67 0.420376
Target:  5'- aGGCCgGCGCcgGCGGcAGCGgcGCCCGCg- -3'
miRNA:   3'- cUCGGgCGCG--CGUU-UCGC--CGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 131777 0.72 0.213785
Target:  5'- cGGCUCgGCGCGCGGauugcGGCGGCCgGCa- -3'
miRNA:   3'- cUCGGG-CGCGCGUU-----UCGCCGGgCGaa -5'
6425 3' -63.2 NC_001847.1 + 131706 0.7 0.297025
Target:  5'- uGGGCgCUGC-CGCAcguGGCGGCCUGCg- -3'
miRNA:   3'- -CUCG-GGCGcGCGUu--UCGCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 131569 0.66 0.521121
Target:  5'- cGGGCCCGgaccUGCAGcuGGCGcGCCUGCUg -3'
miRNA:   3'- -CUCGGGCgc--GCGUU--UCGC-CGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 131453 0.73 0.175809
Target:  5'- -cGCCUaccugugguGCGCGCAGgcucgcGGCGGCCUGCUg -3'
miRNA:   3'- cuCGGG---------CGCGCGUU------UCGCCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 131414 0.72 0.213785
Target:  5'- cGGCCgCGUGCGCGccGUGGCCgGCg- -3'
miRNA:   3'- cUCGG-GCGCGCGUuuCGCCGGgCGaa -5'
6425 3' -63.2 NC_001847.1 + 131406 0.68 0.386749
Target:  5'- -uGCCC-CGagaucCGCGAGGCGGCCgCGCg- -3'
miRNA:   3'- cuCGGGcGC-----GCGUUUCGCCGG-GCGaa -5'
6425 3' -63.2 NC_001847.1 + 131354 0.67 0.43784
Target:  5'- cGGCCgCGUGCGCuucGGCGGCgcgggcgacacCCGCg- -3'
miRNA:   3'- cUCGG-GCGCGCGuu-UCGCCG-----------GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 131296 0.68 0.403341
Target:  5'- aGGGCCCGCuGCugacgccuucugGCGAGGCguGGCCCGg-- -3'
miRNA:   3'- -CUCGGGCG-CG------------CGUUUCG--CCGGGCgaa -5'
6425 3' -63.2 NC_001847.1 + 131249 0.69 0.332326
Target:  5'- -cGCcaCCGCGCGCAA--CGGCUCGCUc -3'
miRNA:   3'- cuCG--GGCGCGCGUUucGCCGGGCGAa -5'
6425 3' -63.2 NC_001847.1 + 131246 0.69 0.325026
Target:  5'- -cGCCCGCGCugGCuacgccGCGGCgCCGCg- -3'
miRNA:   3'- cuCGGGCGCG--CGuuu---CGCCG-GGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.