miRNA display CGI


Results 1 - 20 of 690 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6425 3' -63.2 NC_001847.1 + 135140 0.67 0.429056
Target:  5'- gGGGCCCGCGCGgc--GCGGCgCGg-- -3'
miRNA:   3'- -CUCGGGCGCGCguuuCGCCGgGCgaa -5'
6425 3' -63.2 NC_001847.1 + 135020 0.67 0.420376
Target:  5'- aGGCCCGCGgGCGGGGCcGGggCGCg- -3'
miRNA:   3'- cUCGGGCGCgCGUUUCG-CCggGCGaa -5'
6425 3' -63.2 NC_001847.1 + 134863 0.73 0.193985
Target:  5'- -cGCCCGCGCggGCucGGCGGCCCccggGCUc -3'
miRNA:   3'- cuCGGGCGCG--CGuuUCGCCGGG----CGAa -5'
6425 3' -63.2 NC_001847.1 + 134775 0.67 0.446726
Target:  5'- -cGCgCgGCGCGCGGGGCGGgCCCcgggGCg- -3'
miRNA:   3'- cuCG-GgCGCGCGUUUCGCC-GGG----CGaa -5'
6425 3' -63.2 NC_001847.1 + 134534 0.73 0.1847
Target:  5'- cGGGCCgCGCGCcgcuGCGGAGCGG-CCGCg- -3'
miRNA:   3'- -CUCGG-GCGCG----CGUUUCGCCgGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 134393 0.67 0.43784
Target:  5'- cGGGCCgGCcuCGCccuAGGGgGGCCCGCg- -3'
miRNA:   3'- -CUCGGgCGc-GCG---UUUCgCCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 134236 0.68 0.386749
Target:  5'- -cGCCgGCGgGC--GGCGGCCgGCg- -3'
miRNA:   3'- cuCGGgCGCgCGuuUCGCCGGgCGaa -5'
6425 3' -63.2 NC_001847.1 + 134188 0.72 0.224321
Target:  5'- -cGCCCG-GCGCAgcgugGAGCGGCgCGCg- -3'
miRNA:   3'- cuCGGGCgCGCGU-----UUCGCCGgGCGaa -5'
6425 3' -63.2 NC_001847.1 + 134127 0.66 0.502022
Target:  5'- -cGCgCCGCGgGC--GGCGGCCUGgUg -3'
miRNA:   3'- cuCG-GGCGCgCGuuUCGCCGGGCgAa -5'
6425 3' -63.2 NC_001847.1 + 134036 0.66 0.492588
Target:  5'- gGAGgCCGCG-GCGgcGCcGCCCGCg- -3'
miRNA:   3'- -CUCgGGCGCgCGUuuCGcCGGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 134003 0.69 0.317846
Target:  5'- gGAGCCgCGCGC-CGAGGCGcCgCCGCUg -3'
miRNA:   3'- -CUCGG-GCGCGcGUUUCGCcG-GGCGAa -5'
6425 3' -63.2 NC_001847.1 + 133889 0.68 0.378623
Target:  5'- gGGGCUCgGCGCGCcgcuGCGGCCgGUg- -3'
miRNA:   3'- -CUCGGG-CGCGCGuuu-CGCCGGgCGaa -5'
6425 3' -63.2 NC_001847.1 + 133548 0.74 0.151386
Target:  5'- -uGCgCCGCGCGCuggcccGAGCGGCgCGCUg -3'
miRNA:   3'- cuCG-GGCGCGCGu-----UUCGCCGgGCGAa -5'
6425 3' -63.2 NC_001847.1 + 133343 0.67 0.43784
Target:  5'- -cGCUCgGCGCGCAGGGCGuGCUgcUGCUc -3'
miRNA:   3'- cuCGGG-CGCGCGUUUCGC-CGG--GCGAa -5'
6425 3' -63.2 NC_001847.1 + 133169 0.66 0.521121
Target:  5'- -uGCCCGgggagGCGCu-GGCGGCgCCGCc- -3'
miRNA:   3'- cuCGGGCg----CGCGuuUCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 133049 0.66 0.483236
Target:  5'- cGGCCCGC-CGCcgcGCGGgcCCCGCg- -3'
miRNA:   3'- cUCGGGCGcGCGuuuCGCC--GGGCGaa -5'
6425 3' -63.2 NC_001847.1 + 132914 0.66 0.47397
Target:  5'- -cGCCCGCGCcCAGcgccgcggcgcuGGCGGCCUaCUg -3'
miRNA:   3'- cuCGGGCGCGcGUU------------UCGCCGGGcGAa -5'
6425 3' -63.2 NC_001847.1 + 132831 0.7 0.279849
Target:  5'- -cGCCCGCGUGCuGgggcccaugccgcccGGCGGCcCCGCc- -3'
miRNA:   3'- cuCGGGCGCGCGuU---------------UCGCCG-GGCGaa -5'
6425 3' -63.2 NC_001847.1 + 132627 0.75 0.136858
Target:  5'- cGGCCCGgcagcaaaGCGCGAGGCGGCCCucGCg- -3'
miRNA:   3'- cUCGGGCg-------CGCGUUUCGCCGGG--CGaa -5'
6425 3' -63.2 NC_001847.1 + 132586 0.71 0.258593
Target:  5'- -cGCCCGCGC-CGAAGaCaGCCCGCc- -3'
miRNA:   3'- cuCGGGCGCGcGUUUC-GcCGGGCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.