miRNA display CGI


Results 21 - 40 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 3' -57.1 NC_001847.1 + 26178 0.67 0.804104
Target:  5'- cCGCgcc-UCCcuGCUCGCUcaCCGCCGg -3'
miRNA:   3'- -GCGagaaAGGuuCGAGCGGa-GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 27305 0.66 0.854325
Target:  5'- cCGgUCgc-CCGAGCUuccccuccgCGCCgCCGCCGc -3'
miRNA:   3'- -GCgAGaaaGGUUCGA---------GCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 28368 0.67 0.812911
Target:  5'- cCGCUgCUgca-GAGC-CGCUUCCGCCu -3'
miRNA:   3'- -GCGA-GAaaggUUCGaGCGGAGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 29039 0.73 0.441351
Target:  5'- gCGCUCg--CCGAGCUgcgCGCCgugCuCGCCGg -3'
miRNA:   3'- -GCGAGaaaGGUUCGA---GCGGa--G-GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 29494 0.69 0.668523
Target:  5'- aCGCUCUccggCCGcgGGCggCGCUUCgGCCGc -3'
miRNA:   3'- -GCGAGAaa--GGU--UCGa-GCGGAGgCGGC- -5'
6426 3' -57.1 NC_001847.1 + 30172 0.7 0.641968
Target:  5'- cCGCUCUUccCCGAgcccuggcgcccggcGCUCGCCUUCGaCCc -3'
miRNA:   3'- -GCGAGAAa-GGUU---------------CGAGCGGAGGC-GGc -5'
6426 3' -57.1 NC_001847.1 + 30839 0.66 0.846417
Target:  5'- gGCUCUaccCCGAGg-CGCCgCCGCUGc -3'
miRNA:   3'- gCGAGAaa-GGUUCgaGCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 31849 0.74 0.406018
Target:  5'- aCGUUCgcgcgcCCGGGCUCGCCggcguugCUGCCGg -3'
miRNA:   3'- -GCGAGaaa---GGUUCGAGCGGa------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 32576 0.68 0.728783
Target:  5'- gGCggacgCCAAGCUgCGCCUagucgcggCCGCCGu -3'
miRNA:   3'- gCGagaaaGGUUCGA-GCGGA--------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 33220 0.71 0.533567
Target:  5'- gGCUCggcuuggcgccgcgCCGGGCgccgcggCGCCUCCGCUGc -3'
miRNA:   3'- gCGAGaaa-----------GGUUCGa------GCGGAGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 35149 0.69 0.698905
Target:  5'- gGCUCg--CCAAGUacgUgGCCUucuaCCGCCGg -3'
miRNA:   3'- gCGAGaaaGGUUCG---AgCGGA----GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 35390 0.68 0.728783
Target:  5'- gCGCUUUgaCCAcGCUCGC-UuuGCCGg -3'
miRNA:   3'- -GCGAGAaaGGUuCGAGCGgAggCGGC- -5'
6426 3' -57.1 NC_001847.1 + 39302 0.67 0.765515
Target:  5'- aGCUUggagcccgugCCuGGCUUGCCccugCCGCCGa -3'
miRNA:   3'- gCGAGaaa-------GGuUCGAGCGGa---GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 39719 0.71 0.546488
Target:  5'- gGCUCUgcgcugUCGGGcCUUGgCUCCGCCGa -3'
miRNA:   3'- gCGAGAaa----GGUUC-GAGCgGAGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 39836 0.66 0.862032
Target:  5'- gCGCU---UCCugcguGGCgcgCGCCagCCGCCGg -3'
miRNA:   3'- -GCGAgaaAGGu----UCGa--GCGGa-GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 40907 0.66 0.838314
Target:  5'- cCGCUCcacggcCCGcGCgggCGCC-CCGCCGc -3'
miRNA:   3'- -GCGAGaaa---GGUuCGa--GCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 41569 0.67 0.767406
Target:  5'- gCGCgUCgugUCCGAGCgCGCCUUaaacuugGCCGg -3'
miRNA:   3'- -GCG-AGaa-AGGUUCGaGCGGAGg------CGGC- -5'
6426 3' -57.1 NC_001847.1 + 43881 0.66 0.821554
Target:  5'- gGC-CUUcCgGGGCuUUGCCUUCGCCGu -3'
miRNA:   3'- gCGaGAAaGgUUCG-AGCGGAGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 44313 0.69 0.698905
Target:  5'- cCGCUCg--CUGAuCUCGCC-CCGCCu -3'
miRNA:   3'- -GCGAGaaaGGUUcGAGCGGaGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 44355 0.66 0.846417
Target:  5'- uCGCUCUcgcUCCc-GCUCGCCguuugCGCCu -3'
miRNA:   3'- -GCGAGAa--AGGuuCGAGCGGag---GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.