miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 3' -57.1 NC_001847.1 + 1011 0.66 0.830024
Target:  5'- gCGCUCca-CCAGGC-CGCCgcCCGCgGc -3'
miRNA:   3'- -GCGAGaaaGGUUCGaGCGGa-GGCGgC- -5'
6426 3' -57.1 NC_001847.1 + 1597 0.67 0.812911
Target:  5'- cCGCUCgggCCAGcGCgcggCGCaCUgCGCCGc -3'
miRNA:   3'- -GCGAGaaaGGUU-CGa---GCG-GAgGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 1956 0.69 0.688822
Target:  5'- gCGCUCguccucgCCGGGCggcgccgccagCGCCUCC-CCGg -3'
miRNA:   3'- -GCGAGaaa----GGUUCGa----------GCGGAGGcGGC- -5'
6426 3' -57.1 NC_001847.1 + 2403 0.71 0.576658
Target:  5'- gCGCUCgg-CCGuGGCUCGCUgcgCCGCUu -3'
miRNA:   3'- -GCGAGaaaGGU-UCGAGCGGa--GGCGGc -5'
6426 3' -57.1 NC_001847.1 + 2674 0.71 0.546488
Target:  5'- gGCUCgg-CCGgcaucGGCUCGuCCUCCGCg- -3'
miRNA:   3'- gCGAGaaaGGU-----UCGAGC-GGAGGCGgc -5'
6426 3' -57.1 NC_001847.1 + 3188 0.66 0.830024
Target:  5'- cCGCUCUcgCCGccgucGC-CGCCaUCGCCGg -3'
miRNA:   3'- -GCGAGAaaGGUu----CGaGCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 3302 0.66 0.830024
Target:  5'- aGCUCgg--CGAGCgcggcgcgggCGCCgcugCCGCCGg -3'
miRNA:   3'- gCGAGaaagGUUCGa---------GCGGa---GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 4331 0.72 0.507097
Target:  5'- cCGCUUcggCCGcGGC-CGCCUCCGCCc -3'
miRNA:   3'- -GCGAGaaaGGU-UCGaGCGGAGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 4612 0.66 0.846417
Target:  5'- aGCUCgg-CC-AGCUCGgCgcgggcggcCCGCCGg -3'
miRNA:   3'- gCGAGaaaGGuUCGAGCgGa--------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 6884 0.67 0.812911
Target:  5'- gCGCUUUUgCauuuGGCUCGCCcCUGCCc -3'
miRNA:   3'- -GCGAGAAaGgu--UCGAGCGGaGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 8909 0.7 0.59698
Target:  5'- aGCagCUUUCCAaccgccagggGGC-CGCCUCCGCg- -3'
miRNA:   3'- gCGa-GAAAGGU----------UCGaGCGGAGGCGgc -5'
6426 3' -57.1 NC_001847.1 + 9650 0.68 0.748298
Target:  5'- cCGCUCgagcagCCGGGCguccUCGCgC-CCGCCGc -3'
miRNA:   3'- -GCGAGaaa---GGUUCG----AGCG-GaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 10155 0.69 0.668523
Target:  5'- aGCUCUcgcCCGAGCagGCCggcCCGCUGc -3'
miRNA:   3'- gCGAGAaa-GGUUCGagCGGa--GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 10643 0.66 0.854325
Target:  5'- gGCUCcucgCCGGGCuccUCGCCauacccgUCGCCGg -3'
miRNA:   3'- gCGAGaaa-GGUUCG---AGCGGa------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 17676 0.7 0.59698
Target:  5'- gGCUCgcgguccgCCGGGCaccacCGUCUCCGCCa -3'
miRNA:   3'- gCGAGaaa-----GGUUCGa----GCGGAGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 18515 0.71 0.536539
Target:  5'- aGCUCUgg-CGAGUUCGUCUCCaggguGCCGg -3'
miRNA:   3'- gCGAGAaagGUUCGAGCGGAGG-----CGGC- -5'
6426 3' -57.1 NC_001847.1 + 19374 0.72 0.487855
Target:  5'- aCGCUCUggCCGAgccggcuccccGCUCGgCUCCGCgGc -3'
miRNA:   3'- -GCGAGAaaGGUU-----------CGAGCgGAGGCGgC- -5'
6426 3' -57.1 NC_001847.1 + 21951 0.69 0.666486
Target:  5'- aGCUCgucgUCCGGGCgcugggccgcggCGCCgguugCCGCCc -3'
miRNA:   3'- gCGAGaa--AGGUUCGa-----------GCGGa----GGCGGc -5'
6426 3' -57.1 NC_001847.1 + 23044 0.66 0.862032
Target:  5'- cCGCUCgagccagUCCAccuugCGCCggaCCGCCGg -3'
miRNA:   3'- -GCGAGaa-----AGGUucga-GCGGa--GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 25854 0.66 0.822409
Target:  5'- uCGCUCg--CCAucuuGCUCGCCccccucgcuugcagcCCGCCc -3'
miRNA:   3'- -GCGAGaaaGGUu---CGAGCGGa--------------GGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.