miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 3' -57.1 NC_001847.1 + 112753 0.66 0.862032
Target:  5'- aCGCUCg--CCGcGGCccgggCGCUUCUGCCc -3'
miRNA:   3'- -GCGAGaaaGGU-UCGa----GCGGAGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 76079 0.66 0.849604
Target:  5'- gCGCgccagCCGAGCUgcCGCCucaccaccacucuccUCCGCCGc -3'
miRNA:   3'- -GCGagaaaGGUUCGA--GCGG---------------AGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 30839 0.66 0.846417
Target:  5'- gGCUCUaccCCGAGg-CGCCgCCGCUGc -3'
miRNA:   3'- gCGAGAaa-GGUUCgaGCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 4612 0.66 0.846417
Target:  5'- aGCUCgg-CC-AGCUCGgCgcgggcggcCCGCCGg -3'
miRNA:   3'- gCGAGaaaGGuUCGAGCgGa--------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 68933 0.66 0.838314
Target:  5'- gCGCggcggCCGcgGGCUgCGCCUCCaGCCa -3'
miRNA:   3'- -GCGagaaaGGU--UCGA-GCGGAGG-CGGc -5'
6426 3' -57.1 NC_001847.1 + 66164 0.66 0.838314
Target:  5'- cCGCUgUcucCCGGGCUggCGCCggCCGCCc -3'
miRNA:   3'- -GCGAgAaa-GGUUCGA--GCGGa-GGCGGc -5'
6426 3' -57.1 NC_001847.1 + 40907 0.66 0.838314
Target:  5'- cCGCUCcacggcCCGcGCgggCGCC-CCGCCGc -3'
miRNA:   3'- -GCGAGaaa---GGUuCGa--GCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 128620 0.66 0.838314
Target:  5'- gCGCUUcuacgugUUCCAGGCUgagcgCGCCggcgaCGCCGc -3'
miRNA:   3'- -GCGAGa------AAGGUUCGA-----GCGGag---GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 103426 0.66 0.838314
Target:  5'- gGCUCgucgUCCAGGUaugucUCGC-UCgCGCCGu -3'
miRNA:   3'- gCGAGaa--AGGUUCG-----AGCGgAG-GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 79562 0.66 0.852759
Target:  5'- gGCUCgcggggggcgCCGGGCUCgcgGCCUCuucgggcgggggCGCCGg -3'
miRNA:   3'- gCGAGaaa-------GGUUCGAG---CGGAG------------GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 10643 0.66 0.854325
Target:  5'- gGCUCcucgCCGGGCuccUCGCCauacccgUCGCCGg -3'
miRNA:   3'- gCGAGaaa-GGUUCG---AGCGGa------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 105636 0.66 0.854325
Target:  5'- aGCUCUgcggCCgAAGCgcCGCCcgCgGCCGg -3'
miRNA:   3'- gCGAGAaa--GG-UUCGa-GCGGa-GgCGGC- -5'
6426 3' -57.1 NC_001847.1 + 124217 0.66 0.862032
Target:  5'- cCGCg----CCAgccGGCUCGCCUCgcgguaguaccgCGCCGc -3'
miRNA:   3'- -GCGagaaaGGU---UCGAGCGGAG------------GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 54141 0.66 0.862032
Target:  5'- gCGCUCcuccuggUCCAgcAGCgCGuCCUCCGCg- -3'
miRNA:   3'- -GCGAGaa-----AGGU--UCGaGC-GGAGGCGgc -5'
6426 3' -57.1 NC_001847.1 + 47795 0.66 0.862032
Target:  5'- uGCUCgg-CCAGGC---CCUCgGCCGa -3'
miRNA:   3'- gCGAGaaaGGUUCGagcGGAGgCGGC- -5'
6426 3' -57.1 NC_001847.1 + 39836 0.66 0.862032
Target:  5'- gCGCU---UCCugcguGGCgcgCGCCagCCGCCGg -3'
miRNA:   3'- -GCGAgaaAGGu----UCGa--GCGGa-GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 80429 0.66 0.861271
Target:  5'- aCGCUCacgcgcagggucuUUUCC-AGCUC-CCgCCGCUGg -3'
miRNA:   3'- -GCGAG-------------AAAGGuUCGAGcGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 27305 0.66 0.854325
Target:  5'- cCGgUCgc-CCGAGCUuccccuccgCGCCgCCGCCGc -3'
miRNA:   3'- -GCgAGaaaGGUUCGA---------GCGGaGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 127391 0.66 0.854325
Target:  5'- gGC-Cg--UCGGGCUUGCCcuggCCGCCGc -3'
miRNA:   3'- gCGaGaaaGGUUCGAGCGGa---GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 117354 0.66 0.854325
Target:  5'- cCGCgg---CCGAGCaaaGCC-CCGCCGa -3'
miRNA:   3'- -GCGagaaaGGUUCGag-CGGaGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.