miRNA display CGI


Results 1 - 20 of 126 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 3' -57.1 NC_001847.1 + 31849 0.74 0.406018
Target:  5'- aCGUUCgcgcgcCCGGGCUCGCCggcguugCUGCCGg -3'
miRNA:   3'- -GCGAGaaa---GGUUCGAGCGGa------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 29494 0.69 0.668523
Target:  5'- aCGCUCUccggCCGcgGGCggCGCUUCgGCCGc -3'
miRNA:   3'- -GCGAGAaa--GGU--UCGa-GCGGAGgCGGC- -5'
6426 3' -57.1 NC_001847.1 + 35149 0.69 0.698905
Target:  5'- gGCUCg--CCAAGUacgUgGCCUucuaCCGCCGg -3'
miRNA:   3'- gCGAGaaaGGUUCG---AgCGGA----GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 112753 0.66 0.862032
Target:  5'- aCGCUCg--CCGcGGCccgggCGCUUCUGCCc -3'
miRNA:   3'- -GCGAGaaaGGU-UCGa----GCGGAGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 33220 0.71 0.533567
Target:  5'- gGCUCggcuuggcgccgcgCCGGGCgccgcggCGCCUCCGCUGc -3'
miRNA:   3'- gCGAGaaa-----------GGUUCGa------GCGGAGGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 2674 0.71 0.546488
Target:  5'- gGCUCgg-CCGgcaucGGCUCGuCCUCCGCg- -3'
miRNA:   3'- gCGAGaaaGGU-----UCGAGC-GGAGGCGgc -5'
6426 3' -57.1 NC_001847.1 + 86663 0.71 0.556494
Target:  5'- uGCUCUUcUCgGAGCUCGCCgCgCGCUu -3'
miRNA:   3'- gCGAGAA-AGgUUCGAGCGGaG-GCGGc -5'
6426 3' -57.1 NC_001847.1 + 2403 0.71 0.576658
Target:  5'- gCGCUCgg-CCGuGGCUCGCUgcgCCGCUu -3'
miRNA:   3'- -GCGAGaaaGGU-UCGAGCGGa--GGCGGc -5'
6426 3' -57.1 NC_001847.1 + 58593 0.7 0.627638
Target:  5'- cCGCUUUgcgCgCGGGCUCGCCUuucgcuagcgCUGCCGc -3'
miRNA:   3'- -GCGAGAaa-G-GUUCGAGCGGA----------GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 112968 0.69 0.668523
Target:  5'- aGCUCUcgcCCGAGCagGCCggcCCGCUGc -3'
miRNA:   3'- gCGAGAaa-GGUUCGagCGGa--GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 104769 0.7 0.648106
Target:  5'- gCGCUCguccucgCCGGGCggcccgccagCGCCUCC-CCGg -3'
miRNA:   3'- -GCGAGaaa----GGUUCGa---------GCGGAGGcGGC- -5'
6426 3' -57.1 NC_001847.1 + 8909 0.7 0.59698
Target:  5'- aGCagCUUUCCAaccgccagggGGC-CGCCUCCGCg- -3'
miRNA:   3'- gCGa-GAAAGGU----------UCGaGCGGAGGCGgc -5'
6426 3' -57.1 NC_001847.1 + 131852 0.73 0.441351
Target:  5'- gCGCUCg--CCGAGCUgcgCGCCgugCuCGCCGg -3'
miRNA:   3'- -GCGAGaaaGGUUCGA---GCGGa--G-GCGGC- -5'
6426 3' -57.1 NC_001847.1 + 90837 0.69 0.664447
Target:  5'- cCGCUCUggcgcuggcccgCCGcGCcgCGCCgcgCCGCCGg -3'
miRNA:   3'- -GCGAGAaa----------GGUuCGa-GCGGa--GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 81540 0.73 0.468964
Target:  5'- cCGUUCggcggCCGAGCUCGCCggccCCGCg- -3'
miRNA:   3'- -GCGAGaaa--GGUUCGAGCGGa---GGCGgc -5'
6426 3' -57.1 NC_001847.1 + 87764 0.71 0.576658
Target:  5'- gGCgaucgUCGAGCUCGUCgggCCGCCGg -3'
miRNA:   3'- gCGagaaaGGUUCGAGCGGa--GGCGGC- -5'
6426 3' -57.1 NC_001847.1 + 21951 0.69 0.666486
Target:  5'- aGCUCgucgUCCGGGCgcugggccgcggCGCCgguugCCGCCc -3'
miRNA:   3'- gCGAGaa--AGGUUCGa-----------GCGGa----GGCGGc -5'
6426 3' -57.1 NC_001847.1 + 59646 0.69 0.678692
Target:  5'- gCGCUCUUUUgAGcccGCUCGCgC-CCGCCc -3'
miRNA:   3'- -GCGAGAAAGgUU---CGAGCG-GaGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 107144 0.72 0.507097
Target:  5'- cCGCUUcggCCGcGGC-CGCCUCCGCCc -3'
miRNA:   3'- -GCGAGaaaGGU-UCGaGCGGAGGCGGc -5'
6426 3' -57.1 NC_001847.1 + 39719 0.71 0.546488
Target:  5'- gGCUCUgcgcugUCGGGcCUUGgCUCCGCCGa -3'
miRNA:   3'- gCGAGAaa----GGUUC-GAGCgGAGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.