miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 5' -58.4 NC_001847.1 + 13869 0.66 0.734711
Target:  5'- gGUGGCgAGGGGGggcgccuuuggccggGAGCCcagugccacgacgguGGCUGGGGc -3'
miRNA:   3'- aCGUCG-UCCUCCa--------------CUCGG---------------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 119903 0.66 0.777895
Target:  5'- cUGCAGguGGuGGUGuacggccgacGCCAGCUcGAc- -3'
miRNA:   3'- -ACGUCguCCuCCACu---------CGGUCGA-CUcc -5'
6426 5' -58.4 NC_001847.1 + 33880 0.66 0.730771
Target:  5'- gGCAGUgAGGAGGgacgaggggagcgccGGGCCAGgCUGcucGGGg -3'
miRNA:   3'- aCGUCG-UCCUCCa--------------CUCGGUC-GAC---UCC- -5'
6426 5' -58.4 NC_001847.1 + 12948 0.66 0.777895
Target:  5'- gUGCGGUGGGGcGGcGGGCCGGggGuGGc -3'
miRNA:   3'- -ACGUCGUCCU-CCaCUCGGUCgaCuCC- -5'
6426 5' -58.4 NC_001847.1 + 95340 0.66 0.749349
Target:  5'- gGC-GCAGGGGGcGcAGCCAGggGAGcGg -3'
miRNA:   3'- aCGuCGUCCUCCaC-UCGGUCgaCUC-C- -5'
6426 5' -58.4 NC_001847.1 + 29996 0.66 0.765656
Target:  5'- cGCGGCGGGAGcc--GCCGcugcccgcccgcguGCUGGGGc -3'
miRNA:   3'- aCGUCGUCCUCcacuCGGU--------------CGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 125326 0.67 0.699822
Target:  5'- gGCGGCGGcGGGccGGGCCGGuCUGccGGGa -3'
miRNA:   3'- aCGUCGUCcUCCa-CUCGGUC-GAC--UCC- -5'
6426 5' -58.4 NC_001847.1 + 108856 0.67 0.668322
Target:  5'- gGCGGgAGGAccccggcGGUGAGCaAGCaggGAGGc -3'
miRNA:   3'- aCGUCgUCCU-------CCACUCGgUCGa--CUCC- -5'
6426 5' -58.4 NC_001847.1 + 68999 0.67 0.669344
Target:  5'- aGCGGCucggacgacgAGGAGGaUGAGCU-GCUGcGGu -3'
miRNA:   3'- aCGUCG----------UCCUCC-ACUCGGuCGACuCC- -5'
6426 5' -58.4 NC_001847.1 + 2741 0.67 0.689708
Target:  5'- aGC-GCAGGGcGG-GAGCgAGC-GAGGg -3'
miRNA:   3'- aCGuCGUCCU-CCaCUCGgUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 129940 0.67 0.689708
Target:  5'- cGCcGCGGcGAGa-GAGCCGGC-GAGGg -3'
miRNA:   3'- aCGuCGUC-CUCcaCUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 29511 0.67 0.709879
Target:  5'- cGcCGGC-GGAGGUGccGGCgCGGCUGGcGGc -3'
miRNA:   3'- aC-GUCGuCCUCCAC--UCG-GUCGACU-CC- -5'
6426 5' -58.4 NC_001847.1 + 31707 0.67 0.699822
Target:  5'- gGCGGgGGGAGGcgcGGGCCGcgcgccGCUGcGGa -3'
miRNA:   3'- aCGUCgUCCUCCa--CUCGGU------CGACuCC- -5'
6426 5' -58.4 NC_001847.1 + 27127 0.67 0.689708
Target:  5'- cGCcGCGGcGAGa-GAGCCGGC-GAGGg -3'
miRNA:   3'- aCGuCGUC-CUCcaCUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 26906 0.67 0.679546
Target:  5'- cGCAGgGGGAGcgagcgagaaaaGgaaGAGCCAGC-GGGGa -3'
miRNA:   3'- aCGUCgUCCUC------------Ca--CUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 6043 0.67 0.668322
Target:  5'- gGCGGgAGGAccccggcGGUGAGCaAGCaggGAGGc -3'
miRNA:   3'- aCGUCgUCCU-------CCACUCGgUCGa--CUCC- -5'
6426 5' -58.4 NC_001847.1 + 134520 0.67 0.699822
Target:  5'- gGCGGgGGGAGGcgcGGGCCGcgcgccGCUGcGGa -3'
miRNA:   3'- aCGUCgUCCUCCa--CUCGGU------CGACuCC- -5'
6426 5' -58.4 NC_001847.1 + 132324 0.67 0.709879
Target:  5'- cGcCGGC-GGAGGUGccGGCgCGGCUGGcGGc -3'
miRNA:   3'- aC-GUCGuCCUCCAC--UCG-GUCGACU-CC- -5'
6426 5' -58.4 NC_001847.1 + 22513 0.67 0.699822
Target:  5'- gGCGGCGGcGGGccGGGCCGGuCUGccGGGa -3'
miRNA:   3'- aCGUCGUCcUCCa-CUCGGUC-GAC--UCC- -5'
6426 5' -58.4 NC_001847.1 + 29057 0.67 0.679546
Target:  5'- gUGCuGCAGGcGGUGGGCUgcguGGCgGuGGc -3'
miRNA:   3'- -ACGuCGUCCuCCACUCGG----UCGaCuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.