miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 5' -58.4 NC_001847.1 + 119903 0.66 0.777895
Target:  5'- cUGCAGguGGuGGUGuacggccgacGCCAGCUcGAc- -3'
miRNA:   3'- -ACGUCguCCuCCACu---------CGGUCGA-CUcc -5'
6426 5' -58.4 NC_001847.1 + 33880 0.66 0.730771
Target:  5'- gGCAGUgAGGAGGgacgaggggagcgccGGGCCAGgCUGcucGGGg -3'
miRNA:   3'- aCGUCG-UCCUCCa--------------CUCGGUC-GAC---UCC- -5'
6426 5' -58.4 NC_001847.1 + 113688 0.66 0.739614
Target:  5'- cGgGGCGGGAGGgggaaggggGAGCCggAGCUuuGGc -3'
miRNA:   3'- aCgUCGUCCUCCa--------CUCGG--UCGAcuCC- -5'
6426 5' -58.4 NC_001847.1 + 118674 0.66 0.776961
Target:  5'- gGCAGgGcGGGGGuUGGGCCgggccgcagccccGGCUGGGu -3'
miRNA:   3'- aCGUCgU-CCUCC-ACUCGG-------------UCGACUCc -5'
6426 5' -58.4 NC_001847.1 + 125280 0.66 0.739614
Target:  5'- gGCGGCAGGAgccgucgcaGGUGGGgCAagGCUGGc- -3'
miRNA:   3'- aCGUCGUCCU---------CCACUCgGU--CGACUcc -5'
6426 5' -58.4 NC_001847.1 + 45405 0.66 0.728797
Target:  5'- cGguGCcuAGGAGGUGGGaaaaguaguagucUguGUUGAGGg -3'
miRNA:   3'- aCguCG--UCCUCCACUC-------------GguCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 59559 0.66 0.729784
Target:  5'- gGCGGCGGGGGcG-GuGCCGGCgGAa- -3'
miRNA:   3'- aCGUCGUCCUC-CaCuCGGUCGaCUcc -5'
6426 5' -58.4 NC_001847.1 + 134388 0.66 0.738635
Target:  5'- gGCGGCGGGccggccucgcccuAGGgGGGCCcGCgggaaggGAGGg -3'
miRNA:   3'- aCGUCGUCC-------------UCCaCUCGGuCGa------CUCC- -5'
6426 5' -58.4 NC_001847.1 + 124567 0.66 0.739614
Target:  5'- cGCGcGCGGGGGGgccGCCGGCgccGGGc -3'
miRNA:   3'- aCGU-CGUCCUCCacuCGGUCGac-UCC- -5'
6426 5' -58.4 NC_001847.1 + 13869 0.66 0.734711
Target:  5'- gGUGGCgAGGGGGggcgccuuuggccggGAGCCcagugccacgacgguGGCUGGGGc -3'
miRNA:   3'- aCGUCG-UCCUCCa--------------CUCGG---------------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 31575 0.66 0.738635
Target:  5'- gGCGGCGGGccggccucgcccuAGGgGGGCCcGCgggaaggGAGGg -3'
miRNA:   3'- aCGUCGUCC-------------UCCaCUCGGuCGa------CUCC- -5'
6426 5' -58.4 NC_001847.1 + 21754 0.66 0.739614
Target:  5'- cGCGcGCGGGGGGgccGCCGGCgccGGGc -3'
miRNA:   3'- aCGU-CGUCCUCCacuCGGUCGac-UCC- -5'
6426 5' -58.4 NC_001847.1 + 12948 0.66 0.777895
Target:  5'- gUGCGGUGGGGcGGcGGGCCGGggGuGGc -3'
miRNA:   3'- -ACGUCGUCCU-CCaCUCGGUCgaCuCC- -5'
6426 5' -58.4 NC_001847.1 + 29996 0.66 0.765656
Target:  5'- cGCGGCGGGAGcc--GCCGcugcccgcccgcguGCUGGGGc -3'
miRNA:   3'- aCGUCGUCCUCcacuCGGU--------------CGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 134632 0.66 0.749349
Target:  5'- aGCgugGGCuGGGGGcGGGCCGGCagcaggcgcgGAGGc -3'
miRNA:   3'- aCG---UCGuCCUCCaCUCGGUCGa---------CUCC- -5'
6426 5' -58.4 NC_001847.1 + 95340 0.66 0.749349
Target:  5'- gGC-GCAGGGGGcGcAGCCAGggGAGcGg -3'
miRNA:   3'- aCGuCGUCCUCCaC-UCGGUCgaCUC-C- -5'
6426 5' -58.4 NC_001847.1 + 40608 0.66 0.739614
Target:  5'- cGCAGCguGGGGuuGGUGAuaaGgCAGgUGAGGa -3'
miRNA:   3'- aCGUCG--UCCU--CCACU---CgGUCgACUCC- -5'
6426 5' -58.4 NC_001847.1 + 32878 0.66 0.739614
Target:  5'- gGCGGCcgacGGcGAGGccucggGGGCCGGC-GGGGa -3'
miRNA:   3'- aCGUCG----UC-CUCCa-----CUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 22467 0.66 0.739614
Target:  5'- gGCGGCAGGAgccgucgcaGGUGGGgCAagGCUGGc- -3'
miRNA:   3'- aCGUCGUCCU---------CCACUCgGU--CGACUcc -5'
6426 5' -58.4 NC_001847.1 + 10875 0.66 0.739614
Target:  5'- cGgGGCGGGAGGgggaaggggGAGCCggAGCUuuGGc -3'
miRNA:   3'- aCgUCGUCCUCCa--------CUCGG--UCGAcuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.