miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 5' -58.4 NC_001847.1 + 76177 1.11 0.000972
Target:  5'- cUGCAGCAGGAGGUGAGCCAGCUGAGGg -3'
miRNA:   3'- -ACGUCGUCCUCCACUCGGUCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 34682 0.75 0.263841
Target:  5'- aGCGGCAGGAGGaGcGCUGGCgcGAGGa -3'
miRNA:   3'- aCGUCGUCCUCCaCuCGGUCGa-CUCC- -5'
6426 5' -58.4 NC_001847.1 + 33133 0.75 0.296865
Target:  5'- cUGCGGCGGGuGGUgGAGUgGGUcGAGGg -3'
miRNA:   3'- -ACGUCGUCCuCCA-CUCGgUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 33849 0.74 0.32553
Target:  5'- cGCGGCGGGAGaGaccGCgGGCUGGGGg -3'
miRNA:   3'- aCGUCGUCCUC-CacuCGgUCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 62 0.73 0.340615
Target:  5'- uUGCGGCGGGcGG-GGGCgGGgUGGGGg -3'
miRNA:   3'- -ACGUCGUCCuCCaCUCGgUCgACUCC- -5'
6426 5' -58.4 NC_001847.1 + 115684 0.73 0.340615
Target:  5'- aGCGGCugcgcGGGGGcgaGAGCCGGCUGcGGc -3'
miRNA:   3'- aCGUCGu----CCUCCa--CUCGGUCGACuCC- -5'
6426 5' -58.4 NC_001847.1 + 67964 0.73 0.364179
Target:  5'- cGCGGCAGGGGGUcgccGCCgagAGCgGGGGg -3'
miRNA:   3'- aCGUCGUCCUCCAcu--CGG---UCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 23241 0.73 0.371465
Target:  5'- cGCGGUuccuGGAGGUgcucgucGAGCCGGCUGcaauGGa -3'
miRNA:   3'- aCGUCGu---CCUCCA-------CUCGGUCGACu---CC- -5'
6426 5' -58.4 NC_001847.1 + 126054 0.73 0.371465
Target:  5'- cGCGGUuccuGGAGGUgcucgucGAGCCGGCUGcaauGGa -3'
miRNA:   3'- aCGUCGu---CCUCCA-------CUCGGUCGACu---CC- -5'
6426 5' -58.4 NC_001847.1 + 3556 0.72 0.431419
Target:  5'- gGCGGCGGcGuaguugaGGGUGuAGCCgccggGGCUGAGGa -3'
miRNA:   3'- aCGUCGUC-C-------UCCAC-UCGG-----UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 120838 0.71 0.440438
Target:  5'- aGCAGCGGGAGcG-GGGCCGcgacgccGgaGAGGg -3'
miRNA:   3'- aCGUCGUCCUC-CaCUCGGU-------CgaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 32923 0.71 0.450481
Target:  5'- cGCGGaCGGGAGGa-GGCCGGCggcGGGGc -3'
miRNA:   3'- aCGUC-GUCCUCCacUCGGUCGa--CUCC- -5'
6426 5' -58.4 NC_001847.1 + 121362 0.71 0.450481
Target:  5'- cGCGGCGGGcGGGgugggGAGCgGGCaaggcgGAGGa -3'
miRNA:   3'- aCGUCGUCC-UCCa----CUCGgUCGa-----CUCC- -5'
6426 5' -58.4 NC_001847.1 + 14201 0.71 0.469057
Target:  5'- gGCGGCGGGGcuggcGGUcaGGCCGGCcGGGGg -3'
miRNA:   3'- aCGUCGUCCU-----CCAc-UCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 100881 0.71 0.478491
Target:  5'- gGCGGCAGGGGcgcGGCCGGCggGAGa -3'
miRNA:   3'- aCGUCGUCCUCcacUCGGUCGa-CUCc -5'
6426 5' -58.4 NC_001847.1 + 22478 0.7 0.497632
Target:  5'- cGCGGCGuGGGGGUGAGaaGGagGAGGa -3'
miRNA:   3'- aCGUCGU-CCUCCACUCggUCgaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 11829 0.7 0.50733
Target:  5'- aGCGcGCGGGGGGgggGGcGCCuAGCgGAGGa -3'
miRNA:   3'- aCGU-CGUCCUCCa--CU-CGG-UCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 25883 0.7 0.50733
Target:  5'- aUGCAGCaaGGGAGGagGAGCgGGgUGcGGGg -3'
miRNA:   3'- -ACGUCG--UCCUCCa-CUCGgUCgAC-UCC- -5'
6426 5' -58.4 NC_001847.1 + 125764 0.7 0.50733
Target:  5'- cUGgGGUGGGcugGGGUGGGCUgggcugGGCUGGGGu -3'
miRNA:   3'- -ACgUCGUCC---UCCACUCGG------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 125728 0.7 0.50733
Target:  5'- gGCugGGCuGG-GGUGGGCUGGCUGGGc -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGGUCGACUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.