miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 5' -58.4 NC_001847.1 + 34682 0.75 0.263841
Target:  5'- aGCGGCAGGAGGaGcGCUGGCgcGAGGa -3'
miRNA:   3'- aCGUCGUCCUCCaCuCGGUCGa-CUCC- -5'
6426 5' -58.4 NC_001847.1 + 106378 0.69 0.56701
Target:  5'- cUGCAGCAGGc---GcGCCAGCUGcAGGu -3'
miRNA:   3'- -ACGUCGUCCuccaCuCGGUCGAC-UCC- -5'
6426 5' -58.4 NC_001847.1 + 125907 0.69 0.56701
Target:  5'- gGCugGGCuGG-GGUGGGCUGGgCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGGUC-GACUCC- -5'
6426 5' -58.4 NC_001847.1 + 118674 0.66 0.776961
Target:  5'- gGCAGgGcGGGGGuUGGGCCgggccgcagccccGGCUGGGu -3'
miRNA:   3'- aCGUCgU-CCUCC-ACUCGG-------------UCGACUCc -5'
6426 5' -58.4 NC_001847.1 + 3556 0.72 0.431419
Target:  5'- gGCGGCGGcGuaguugaGGGUGuAGCCgccggGGCUGAGGa -3'
miRNA:   3'- aCGUCGUC-C-------UCCAC-UCGG-----UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 120838 0.71 0.440438
Target:  5'- aGCAGCGGGAGcG-GGGCCGcgacgccGgaGAGGg -3'
miRNA:   3'- aCGUCGUCCUC-CaCUCGGU-------CgaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 100881 0.71 0.478491
Target:  5'- gGCGGCAGGGGcgcGGCCGGCggGAGa -3'
miRNA:   3'- aCGUCGUCCUCcacUCGGUCGa-CUCc -5'
6426 5' -58.4 NC_001847.1 + 22478 0.7 0.497632
Target:  5'- cGCGGCGuGGGGGUGAGaaGGagGAGGa -3'
miRNA:   3'- aCGUCGU-CCUCCACUCggUCgaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 128696 0.7 0.50733
Target:  5'- aUGCAGCaaGGGAGGagGAGCgGGgUGcGGGg -3'
miRNA:   3'- -ACGUCG--UCCUCCa-CUCGgUCgAC-UCC- -5'
6426 5' -58.4 NC_001847.1 + 8294 0.69 0.555906
Target:  5'- aGCGGCAGGgcuccccGGG-GGGCCAGgCUGucggcAGGa -3'
miRNA:   3'- aCGUCGUCC-------UCCaCUCGGUC-GAC-----UCC- -5'
6426 5' -58.4 NC_001847.1 + 81230 0.7 0.536883
Target:  5'- gGCGGCAGcGGcGGcGGGCCAGgCUGGGc -3'
miRNA:   3'- aCGUCGUC-CU-CCaCUCGGUC-GACUCc -5'
6426 5' -58.4 NC_001847.1 + 125728 0.7 0.50733
Target:  5'- gGCugGGCuGG-GGUGGGCUGGCUGGGc -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGGUCGACUCc -5'
6426 5' -58.4 NC_001847.1 + 62 0.73 0.340615
Target:  5'- uUGCGGCGGGcGG-GGGCgGGgUGGGGg -3'
miRNA:   3'- -ACGUCGUCCuCCaCUCGgUCgACUCC- -5'
6426 5' -58.4 NC_001847.1 + 24738 0.7 0.536883
Target:  5'- cGUaaaGGcCGGGccGUGcAGCCGGCUGAGGu -3'
miRNA:   3'- aCG---UC-GUCCucCAC-UCGGUCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 67964 0.73 0.364179
Target:  5'- cGCGGCAGGGGGUcgccGCCgagAGCgGGGGg -3'
miRNA:   3'- aCGUCGUCCUCCAcu--CGG---UCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 125764 0.7 0.50733
Target:  5'- cUGgGGUGGGcugGGGUGGGCUgggcugGGCUGGGGu -3'
miRNA:   3'- -ACgUCGUCC---UCCACUCGG------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 108479 0.7 0.546869
Target:  5'- cGCc-CAGGcgcgaAGGUGGGCCGGCcGGGGc -3'
miRNA:   3'- aCGucGUCC-----UCCACUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 125877 0.69 0.56701
Target:  5'- gGCugGGCuGG-GGUGGGCUGGgCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGGUC-GACUCC- -5'
6426 5' -58.4 NC_001847.1 + 126054 0.73 0.371465
Target:  5'- cGCGGUuccuGGAGGUgcucgucGAGCCGGCUGcaauGGa -3'
miRNA:   3'- aCGUCGu---CCUCCA-------CUCGGUCGACu---CC- -5'
6426 5' -58.4 NC_001847.1 + 121362 0.71 0.450481
Target:  5'- cGCGGCGGGcGGGgugggGAGCgGGCaaggcgGAGGa -3'
miRNA:   3'- aCGUCGUCC-UCCa----CUCGgUCGa-----CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.