miRNA display CGI


Results 1 - 20 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 5' -58.4 NC_001847.1 + 62 0.73 0.340615
Target:  5'- uUGCGGCGGGcGG-GGGCgGGgUGGGGg -3'
miRNA:   3'- -ACGUCGUCCuCCaCUCGgUCgACUCC- -5'
6426 5' -58.4 NC_001847.1 + 2741 0.67 0.689708
Target:  5'- aGC-GCAGGGcGG-GAGCgAGC-GAGGg -3'
miRNA:   3'- aCGuCGUCCU-CCaCUCGgUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 3556 0.72 0.431419
Target:  5'- gGCGGCGGcGuaguugaGGGUGuAGCCgccggGGCUGAGGa -3'
miRNA:   3'- aCGUCGUC-C-------UCCAC-UCGG-----UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 3565 0.69 0.56701
Target:  5'- cUGCAGCAGGc---GcGCCAGCUGcAGGu -3'
miRNA:   3'- -ACGUCGUCCuccaCuCGGUCGAC-UCC- -5'
6426 5' -58.4 NC_001847.1 + 3939 0.68 0.61497
Target:  5'- gGCAGCGGGcGGcGAgcgcgacccacagcGCCAGCgcGAGGu -3'
miRNA:   3'- aCGUCGUCCuCCaCU--------------CGGUCGa-CUCC- -5'
6426 5' -58.4 NC_001847.1 + 3947 0.7 0.536883
Target:  5'- cGCGGCGGGGGG-GGcGCCgucuccGGCggcGAGGg -3'
miRNA:   3'- aCGUCGUCCUCCaCU-CGG------UCGa--CUCC- -5'
6426 5' -58.4 NC_001847.1 + 5666 0.7 0.546869
Target:  5'- cGCc-CAGGcgcgaAGGUGGGCCGGCcGGGGc -3'
miRNA:   3'- aCGucGUCC-----UCCACUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 6043 0.67 0.668322
Target:  5'- gGCGGgAGGAccccggcGGUGAGCaAGCaggGAGGc -3'
miRNA:   3'- aCGUCgUCCU-------CCACUCGgUCGa--CUCC- -5'
6426 5' -58.4 NC_001847.1 + 8294 0.69 0.555906
Target:  5'- aGCGGCAGGgcuccccGGG-GGGCCAGgCUGucggcAGGa -3'
miRNA:   3'- aCGUCGUCC-------UCCaCUCGGUC-GAC-----UCC- -5'
6426 5' -58.4 NC_001847.1 + 10875 0.66 0.739614
Target:  5'- cGgGGCGGGAGGgggaaggggGAGCCggAGCUuuGGc -3'
miRNA:   3'- aCgUCGUCCUCCa--------CUCGG--UCGAcuCC- -5'
6426 5' -58.4 NC_001847.1 + 10912 0.68 0.659112
Target:  5'- gGCGGCGcgguacuaccGcGAGGcGAGCCGGCUGGc- -3'
miRNA:   3'- aCGUCGU----------C-CUCCaCUCGGUCGACUcc -5'
6426 5' -58.4 NC_001847.1 + 11829 0.7 0.50733
Target:  5'- aGCGcGCGGGGGGgggGGcGCCuAGCgGAGGa -3'
miRNA:   3'- aCGU-CGUCCUCCa--CU-CGG-UCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 12948 0.66 0.777895
Target:  5'- gUGCGGUGGGGcGGcGGGCCGGggGuGGc -3'
miRNA:   3'- -ACGUCGUCCU-CCaCUCGGUCgaCuCC- -5'
6426 5' -58.4 NC_001847.1 + 13809 0.66 0.772273
Target:  5'- cGCAGCGGuGuacGG-GGGCCGGCgugugacggugcgcGAGGg -3'
miRNA:   3'- aCGUCGUC-Cu--CCaCUCGGUCGa-------------CUCC- -5'
6426 5' -58.4 NC_001847.1 + 13869 0.66 0.734711
Target:  5'- gGUGGCgAGGGGGggcgccuuuggccggGAGCCcagugccacgacgguGGCUGGGGc -3'
miRNA:   3'- aCGUCG-UCCUCCa--------------CUCGG---------------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 14201 0.71 0.469057
Target:  5'- gGCGGCGGGGcuggcGGUcaGGCCGGCcGGGGg -3'
miRNA:   3'- aCGUCGUCCU-----CCAc-UCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 21390 0.69 0.60779
Target:  5'- aGgGGaAGGAGGggauucGGGCCGGCcGAGGa -3'
miRNA:   3'- aCgUCgUCCUCCa-----CUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 21754 0.66 0.739614
Target:  5'- cGCGcGCGGGGGGgccGCCGGCgccGGGc -3'
miRNA:   3'- aCGU-CGUCCUCCacuCGGUCGac-UCC- -5'
6426 5' -58.4 NC_001847.1 + 21857 0.69 0.577153
Target:  5'- gUGCAGCAGGuGGUGcGggGGCUGcGGc -3'
miRNA:   3'- -ACGUCGUCCuCCACuCggUCGACuCC- -5'
6426 5' -58.4 NC_001847.1 + 22467 0.66 0.739614
Target:  5'- gGCGGCAGGAgccgucgcaGGUGGGgCAagGCUGGc- -3'
miRNA:   3'- aCGUCGUCCU---------CCACUCgGU--CGACUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.