miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 5' -58.4 NC_001847.1 + 56388 0.68 0.659112
Target:  5'- cGCucgGGUcgGGGAGGUcGGCCGGCgcGGGGa -3'
miRNA:   3'- aCG---UCG--UCCUCCAcUCGGUCGa-CUCC- -5'
6426 5' -58.4 NC_001847.1 + 10912 0.68 0.659112
Target:  5'- gGCGGCGcgguacuaccGcGAGGcGAGCCGGCUGGc- -3'
miRNA:   3'- aCGUCGU----------C-CUCCaCUCGGUCGACUcc -5'
6426 5' -58.4 NC_001847.1 + 129719 0.68 0.656038
Target:  5'- cGCAGgGGGAGcgagcgagaaaggaaGAGCCAGC-GGGGa -3'
miRNA:   3'- aCGUCgUCCUCca-------------CUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 73722 0.68 0.648858
Target:  5'- cGCGGCcGcGGGcGUcgaGGGCCGGCUGgAGGa -3'
miRNA:   3'- aCGUCGuC-CUC-CA---CUCGGUCGAC-UCC- -5'
6426 5' -58.4 NC_001847.1 + 109353 0.68 0.645779
Target:  5'- aGCAGCucGAGGccgagcacgcggaaUGGGCgCAGCUGGGc -3'
miRNA:   3'- aCGUCGucCUCC--------------ACUCG-GUCGACUCc -5'
6426 5' -58.4 NC_001847.1 + 99554 0.68 0.63859
Target:  5'- cGCAGCAGGuucuugAGGUuGGCCAGCcc-GGc -3'
miRNA:   3'- aCGUCGUCC------UCCAcUCGGUCGacuCC- -5'
6426 5' -58.4 NC_001847.1 + 121413 0.68 0.63859
Target:  5'- aGCuGCGuGGAGGgcgGAGCC-GUUGAGcGg -3'
miRNA:   3'- aCGuCGU-CCUCCa--CUCGGuCGACUC-C- -5'
6426 5' -58.4 NC_001847.1 + 3939 0.68 0.61497
Target:  5'- gGCAGCGGGcGGcGAgcgcgacccacagcGCCAGCgcGAGGu -3'
miRNA:   3'- aCGUCGUCCuCCaCU--------------CGGUCGa-CUCC- -5'
6426 5' -58.4 NC_001847.1 + 59372 0.69 0.608815
Target:  5'- gGCAGCGGcGGcGGccggcaaaaaauacgGAGCCGGCgGAGGc -3'
miRNA:   3'- aCGUCGUC-CU-CCa--------------CUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 21390 0.69 0.60779
Target:  5'- aGgGGaAGGAGGggauucGGGCCGGCcGAGGa -3'
miRNA:   3'- aCgUCgUCCUCCa-----CUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 124203 0.69 0.60779
Target:  5'- aGgGGaAGGAGGggauucGGGCCGGCcGAGGa -3'
miRNA:   3'- aCgUCgUCCUCCa-----CUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 23124 0.69 0.597549
Target:  5'- gGCugGGCuGG-GGUGGGCUgggcugGGCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGG------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 23164 0.69 0.597549
Target:  5'- gGCugGGCuGG-GGUGGGCUgggcugGGCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGG------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 125977 0.69 0.597549
Target:  5'- gGCugGGCuGG-GGUGGGCUgggcugGGCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGG------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 125937 0.69 0.597549
Target:  5'- gGCugGGCuGG-GGUGGGCUgggcugGGCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGG------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 22950 0.69 0.597549
Target:  5'- gGCugGGUGGGcugGGGUGGGCUgggcugGGCUGGGGu -3'
miRNA:   3'- aCG--UCGUCC---UCCACUCGG------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 57260 0.69 0.597549
Target:  5'- aGCgAGCcGGuGGaGGGCCAGCUcggcGAGGa -3'
miRNA:   3'- aCG-UCGuCCuCCaCUCGGUCGA----CUCC- -5'
6426 5' -58.4 NC_001847.1 + 84455 0.69 0.587335
Target:  5'- gUGC-GCGGGGGGUgggGAGCgGGggGGGGg -3'
miRNA:   3'- -ACGuCGUCCUCCA---CUCGgUCgaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 33708 0.69 0.587335
Target:  5'- cGCGGCGGcgcGUG-GCCgAGCUGGGGg -3'
miRNA:   3'- aCGUCGUCcucCACuCGG-UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 106760 0.69 0.577153
Target:  5'- cGCGGCGGGGGG-GGcGCCgucuccGGCgcGAGGg -3'
miRNA:   3'- aCGUCGUCCUCCaCU-CGG------UCGa-CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.