miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6426 5' -58.4 NC_001847.1 + 22478 0.7 0.497632
Target:  5'- cGCGGCGuGGGGGUGAGaaGGagGAGGa -3'
miRNA:   3'- aCGUCGU-CCUCCACUCggUCgaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 22513 0.67 0.699822
Target:  5'- gGCGGCGGcGGGccGGGCCGGuCUGccGGGa -3'
miRNA:   3'- aCGUCGUCcUCCa-CUCGGUC-GAC--UCC- -5'
6426 5' -58.4 NC_001847.1 + 22950 0.69 0.597549
Target:  5'- gGCugGGUGGGcugGGGUGGGCUgggcugGGCUGGGGu -3'
miRNA:   3'- aCG--UCGUCC---UCCACUCGG------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 23064 0.69 0.56701
Target:  5'- gGCugGGCuGG-GGUGGGCUGGgCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGGUC-GACUCC- -5'
6426 5' -58.4 NC_001847.1 + 23094 0.69 0.56701
Target:  5'- gGCugGGCuGG-GGUGGGCUGGgCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGGUC-GACUCC- -5'
6426 5' -58.4 NC_001847.1 + 23124 0.69 0.597549
Target:  5'- gGCugGGCuGG-GGUGGGCUgggcugGGCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGG------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 23164 0.69 0.597549
Target:  5'- gGCugGGCuGG-GGUGGGCUgggcugGGCUGGGGu -3'
miRNA:   3'- aCG--UCGuCCuCCACUCGG------UCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 23241 0.73 0.371465
Target:  5'- cGCGGUuccuGGAGGUgcucgucGAGCCGGCUGcaauGGa -3'
miRNA:   3'- aCGUCGu---CCUCCA-------CUCGGUCGACu---CC- -5'
6426 5' -58.4 NC_001847.1 + 24738 0.7 0.536883
Target:  5'- cGUaaaGGcCGGGccGUGcAGCCGGCUGAGGu -3'
miRNA:   3'- aCG---UC-GUCCucCAC-UCGGUCGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 25883 0.7 0.50733
Target:  5'- aUGCAGCaaGGGAGGagGAGCgGGgUGcGGGg -3'
miRNA:   3'- -ACGUCG--UCCUCCa-CUCGgUCgAC-UCC- -5'
6426 5' -58.4 NC_001847.1 + 26906 0.67 0.679546
Target:  5'- cGCAGgGGGAGcgagcgagaaaaGgaaGAGCCAGC-GGGGa -3'
miRNA:   3'- aCGUCgUCCUC------------Ca--CUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 27127 0.67 0.689708
Target:  5'- cGCcGCGGcGAGa-GAGCCGGC-GAGGg -3'
miRNA:   3'- aCGuCGUC-CUCcaCUCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 29057 0.67 0.679546
Target:  5'- gUGCuGCAGGcGGUGGGCUgcguGGCgGuGGc -3'
miRNA:   3'- -ACGuCGUCCuCCACUCGG----UCGaCuCC- -5'
6426 5' -58.4 NC_001847.1 + 29511 0.67 0.709879
Target:  5'- cGcCGGC-GGAGGUGccGGCgCGGCUGGcGGc -3'
miRNA:   3'- aC-GUCGuCCUCCAC--UCG-GUCGACU-CC- -5'
6426 5' -58.4 NC_001847.1 + 29548 0.69 0.56701
Target:  5'- cGCGGCccuGGAGGcc-GCCGGCgGGGGc -3'
miRNA:   3'- aCGUCGu--CCUCCacuCGGUCGaCUCC- -5'
6426 5' -58.4 NC_001847.1 + 29996 0.66 0.765656
Target:  5'- cGCGGCGGGAGcc--GCCGcugcccgcccgcguGCUGGGGc -3'
miRNA:   3'- aCGUCGUCCUCcacuCGGU--------------CGACUCC- -5'
6426 5' -58.4 NC_001847.1 + 30452 0.7 0.517109
Target:  5'- gGCuGCAcGAGGUGGGCCGcuuucugcagcGCUGGGa -3'
miRNA:   3'- aCGuCGUcCUCCACUCGGU-----------CGACUCc -5'
6426 5' -58.4 NC_001847.1 + 31575 0.66 0.738635
Target:  5'- gGCGGCGGGccggccucgcccuAGGgGGGCCcGCgggaaggGAGGg -3'
miRNA:   3'- aCGUCGUCC-------------UCCaCUCGGuCGa------CUCC- -5'
6426 5' -58.4 NC_001847.1 + 31707 0.67 0.699822
Target:  5'- gGCGGgGGGAGGcgcGGGCCGcgcgccGCUGcGGa -3'
miRNA:   3'- aCGUCgUCCUCCa--CUCGGU------CGACuCC- -5'
6426 5' -58.4 NC_001847.1 + 32340 0.7 0.526961
Target:  5'- cGCGGCGcGGAGG-GGGCCcAGCccccgcgcgGGGGg -3'
miRNA:   3'- aCGUCGU-CCUCCaCUCGG-UCGa--------CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.