miRNA display CGI


Results 1 - 20 of 207 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6429 5' -63.4 NC_001847.1 + 65529 0.66 0.545034
Target:  5'- cGGcCGCCC-GG-CCGCGCCGcUCGu- -3'
miRNA:   3'- aCCuGCGGGaCCgGGCGCGGU-AGCua -5'
6429 5' -63.4 NC_001847.1 + 101917 0.66 0.545034
Target:  5'- cGcGGCGCCC-GGCgCgGCGCCAagcCGAg -3'
miRNA:   3'- aC-CUGCGGGaCCG-GgCGCGGUa--GCUa -5'
6429 5' -63.4 NC_001847.1 + 53053 0.66 0.545034
Target:  5'- -aGGCGCCCUccggcgacGGCgucagaCGCGCCGUCGc- -3'
miRNA:   3'- acCUGCGGGA--------CCGg-----GCGCGGUAGCua -5'
6429 5' -63.4 NC_001847.1 + 103174 0.66 0.545034
Target:  5'- gGcGGCGUCCacggGGCCCGCcGCCGccgCGGc -3'
miRNA:   3'- aC-CUGCGGGa---CCGGGCG-CGGUa--GCUa -5'
6429 5' -63.4 NC_001847.1 + 62914 0.66 0.545034
Target:  5'- cGGGUGCUCggGGCCCGCGggcggcuccUCGUCGGg -3'
miRNA:   3'- aCCUGCGGGa-CCGGGCGC---------GGUAGCUa -5'
6429 5' -63.4 NC_001847.1 + 40169 0.66 0.545034
Target:  5'- cUGGGCGUCCUGGUC-GCGgCucugCGAg -3'
miRNA:   3'- -ACCUGCGGGACCGGgCGCgGua--GCUa -5'
6429 5' -63.4 NC_001847.1 + 68446 0.66 0.545034
Target:  5'- cGGcCGCagaGGUCCGCGCCcgCGGc -3'
miRNA:   3'- aCCuGCGggaCCGGGCGCGGuaGCUa -5'
6429 5' -63.4 NC_001847.1 + 38571 0.66 0.54214
Target:  5'- cGGGCGCCCaGGCacacggccagcagaCCGCGCgCG-CGGc -3'
miRNA:   3'- aCCUGCGGGaCCG--------------GGCGCG-GUaGCUa -5'
6429 5' -63.4 NC_001847.1 + 5032 0.66 0.541176
Target:  5'- aGGGCGCUCUcguacucgucccaGCCCGCGUCgcgGUCGGg -3'
miRNA:   3'- aCCUGCGGGAc------------CGGGCGCGG---UAGCUa -5'
6429 5' -63.4 NC_001847.1 + 124543 0.66 0.535406
Target:  5'- aGGGCGCgggCCggcgccGGCCCGCGCgCG-CGGg -3'
miRNA:   3'- aCCUGCG---GGa-----CCGGGCGCG-GUaGCUa -5'
6429 5' -63.4 NC_001847.1 + 103572 0.66 0.535406
Target:  5'- aGGGCGaggCC-GGCCCGCcGCCggCGGc -3'
miRNA:   3'- aCCUGCg--GGaCCGGGCG-CGGuaGCUa -5'
6429 5' -63.4 NC_001847.1 + 80754 0.66 0.535406
Target:  5'- -cGugGaCUUGGUCCGCGCCGgcgCGGa -3'
miRNA:   3'- acCugCgGGACCGGGCGCGGUa--GCUa -5'
6429 5' -63.4 NC_001847.1 + 759 0.66 0.535406
Target:  5'- aGGGCGaggCC-GGCCCGCcGCCggCGGc -3'
miRNA:   3'- aCCUGCg--GGaCCGGGCG-CGGuaGCUa -5'
6429 5' -63.4 NC_001847.1 + 21730 0.66 0.535406
Target:  5'- aGGGCGCgggCCggcgccGGCCCGCGCgCG-CGGg -3'
miRNA:   3'- aCCUGCG---GGa-----CCGGGCGCG-GUaGCUa -5'
6429 5' -63.4 NC_001847.1 + 13880 0.66 0.535406
Target:  5'- gGGGCGCCuUUGGCCgggagcccaGUGCCA-CGAc -3'
miRNA:   3'- aCCUGCGG-GACCGGg--------CGCGGUaGCUa -5'
6429 5' -63.4 NC_001847.1 + 26652 0.66 0.535406
Target:  5'- cUGGGCgGCCCcGGCCggcccaccuuCGCGCCugggCGGg -3'
miRNA:   3'- -ACCUG-CGGGaCCGG----------GCGCGGua--GCUa -5'
6429 5' -63.4 NC_001847.1 + 46095 0.66 0.535406
Target:  5'- -aGGCGCCC-GGCCCGCuUCcgCGGg -3'
miRNA:   3'- acCUGCGGGaCCGGGCGcGGuaGCUa -5'
6429 5' -63.4 NC_001847.1 + 121798 0.66 0.535406
Target:  5'- cGGGCGCCuCUGaguGCCguaGCGCCAgcaGGUa -3'
miRNA:   3'- aCCUGCGG-GAC---CGGg--CGCGGUag-CUA- -5'
6429 5' -63.4 NC_001847.1 + 129465 0.66 0.535406
Target:  5'- cUGGGCgGCCCcGGCCggcccaccuuCGCGCCugggCGGg -3'
miRNA:   3'- -ACCUG-CGGGaCCGG----------GCGCGGua--GCUa -5'
6429 5' -63.4 NC_001847.1 + 103688 0.66 0.525837
Target:  5'- -cGACGCCCaUGGCgCCcacgaucaccaGCGCCAgCGAc -3'
miRNA:   3'- acCUGCGGG-ACCG-GG-----------CGCGGUaGCUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.