miRNA display CGI


Results 61 - 80 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 66410 0.67 0.911534
Target:  5'- aCAUCCGCGGcGCG-GGCUgacguaCAcCCUCc -3'
miRNA:   3'- cGUAGGCGCC-CGUuCUGAa-----GUuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 21914 0.67 0.911534
Target:  5'- gGCcgaggCCGCGGGCGAGGCggaggagagGACCg- -3'
miRNA:   3'- -CGua---GGCGCCCGUUCUGaag------UUGGag -5'
6442 3' -53.4 NC_001847.1 + 58351 0.67 0.911534
Target:  5'- aGCAgagggCgGCcaGGcGCGGGACgUCGGCCUCg -3'
miRNA:   3'- -CGUa----GgCG--CC-CGUUCUGaAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 12085 0.68 0.905261
Target:  5'- aGCG-CCGCGGGUccGGCgcccgCGGCCg- -3'
miRNA:   3'- -CGUaGGCGCCCGuuCUGaa---GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 101546 0.68 0.901378
Target:  5'- gGCGUCCaGCuGGcGCAGGACgucgUCGgcaccgcgcacggccGCCUCc -3'
miRNA:   3'- -CGUAGG-CG-CC-CGUUCUGa---AGU---------------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 53132 0.68 0.89874
Target:  5'- cCAUCCuCGGGCAgguacAGACguaCAACUUCc -3'
miRNA:   3'- cGUAGGcGCCCGU-----UCUGaa-GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 77247 0.68 0.89874
Target:  5'- cGCgGUCgCGCGGGCGcuggcGGGCgaCAcCCUCg -3'
miRNA:   3'- -CG-UAG-GCGCCCGU-----UCUGaaGUuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 123093 0.68 0.89874
Target:  5'- gGCGUCCGCaGcGcGCAGGGCgucCAGCgCUCc -3'
miRNA:   3'- -CGUAGGCG-C-C-CGUUCUGaa-GUUG-GAG- -5'
6442 3' -53.4 NC_001847.1 + 116651 0.68 0.89874
Target:  5'- gGCAgCCGCGGGCAc-GCUggUGGCCUg -3'
miRNA:   3'- -CGUaGGCGCCCGUucUGAa-GUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 49056 0.68 0.891973
Target:  5'- cGCAgcucacggCCGCGGGC--GGCggCAGCCg- -3'
miRNA:   3'- -CGUa-------GGCGCCCGuuCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 22418 0.68 0.891973
Target:  5'- uCGUCCGCggGGGCGGGGCccgaGACCa- -3'
miRNA:   3'- cGUAGGCG--CCCGUUCUGaag-UUGGag -5'
6442 3' -53.4 NC_001847.1 + 96943 0.68 0.891973
Target:  5'- gGCcUCCGCGGGCGgcAGGCgcu--CUUCg -3'
miRNA:   3'- -CGuAGGCGCCCGU--UCUGaaguuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 125231 0.68 0.891973
Target:  5'- uCGUCCGCggGGGCGGGGCccgaGACCa- -3'
miRNA:   3'- cGUAGGCG--CCCGUUCUGaag-UUGGag -5'
6442 3' -53.4 NC_001847.1 + 34782 0.68 0.884965
Target:  5'- cGCggCCGCGGcGCGcGGCUaCGACC-Cg -3'
miRNA:   3'- -CGuaGGCGCC-CGUuCUGAaGUUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 116484 0.68 0.884965
Target:  5'- aGCGU-CGCGGGCGGGcACggcgUCGcgcucgccgagcACCUCu -3'
miRNA:   3'- -CGUAgGCGCCCGUUC-UGa---AGU------------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 124727 0.68 0.884965
Target:  5'- gGCcgaggCCGCGGGCGAGGCggagagagGACCg- -3'
miRNA:   3'- -CGua---GGCGCCCGUUCUGaag-----UUGGag -5'
6442 3' -53.4 NC_001847.1 + 4318 0.68 0.880646
Target:  5'- cGCcgCCuGCGGGUAgugcuccgccauguaGGGCgccagcUCGGCCUCg -3'
miRNA:   3'- -CGuaGG-CGCCCGU---------------UCUGa-----AGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 17122 0.68 0.877719
Target:  5'- gGCAgguuUCCGCuGGCGcucccGGCUUCGuCCUCg -3'
miRNA:   3'- -CGU----AGGCGcCCGUu----CUGAAGUuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 2093 0.68 0.877719
Target:  5'- cGCGgggcCCGCGcGGCGgcGGGCcgCGAUCUCg -3'
miRNA:   3'- -CGUa---GGCGC-CCGU--UCUGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 13298 0.68 0.877719
Target:  5'- cGCGcuaCGCGGGCGccGGGCUgcagUCGGCCg- -3'
miRNA:   3'- -CGUag-GCGCCCGU--UCUGA----AGUUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.