miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 53640 0.67 0.93911
Target:  5'- cGCGUCCGCgacaaagaccGGGCAcccGGGCcgcUCAACUg- -3'
miRNA:   3'- -CGUAGGCG----------CCCGU---UCUGa--AGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 69216 0.67 0.93911
Target:  5'- gGCGUCCGCGGGgAAcgccGACgccgCGACg-- -3'
miRNA:   3'- -CGUAGGCGCCCgUU----CUGaa--GUUGgag -5'
6442 3' -53.4 NC_001847.1 + 30605 0.67 0.93911
Target:  5'- cGCGgcuggCCGCGGcGCGGcggcGGCUgaUCGugCUCg -3'
miRNA:   3'- -CGUa----GGCGCC-CGUU----CUGA--AGUugGAG- -5'
6442 3' -53.4 NC_001847.1 + 120614 0.67 0.938621
Target:  5'- gGCA-CCGCGGGCAgcgagcgccgccgAGACgUCuuucCCUUg -3'
miRNA:   3'- -CGUaGGCGCCCGU-------------UCUGaAGuu--GGAG- -5'
6442 3' -53.4 NC_001847.1 + 32678 0.67 0.938621
Target:  5'- uGCAUCCGCcGGUggcuggaGGGGCgccCGACCUg -3'
miRNA:   3'- -CGUAGGCGcCCG-------UUCUGaa-GUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 20510 0.67 0.937634
Target:  5'- cGCGUCguCGCGGGCGggggcccacuggaaGGACgUgAACUUCu -3'
miRNA:   3'- -CGUAG--GCGCCCGU--------------UCUGaAgUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 78327 0.67 0.934101
Target:  5'- cGCG-CCGCGGGCccGGCUUgGgcGCCg- -3'
miRNA:   3'- -CGUaGGCGCCCGuuCUGAAgU--UGGag -5'
6442 3' -53.4 NC_001847.1 + 105621 0.67 0.934101
Target:  5'- cGCGcCgCGCGGGCGAG-CUcugCGGCCg- -3'
miRNA:   3'- -CGUaG-GCGCCCGUUCuGAa--GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 73273 0.67 0.934101
Target:  5'- uGCAacccCCGCGGGCGcucggcAGGCg-CGGCCUa -3'
miRNA:   3'- -CGUa---GGCGCCCGU------UCUGaaGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 103784 0.67 0.934101
Target:  5'- gGCAcCCgGCcGGCGGGGCUUCcGCCg- -3'
miRNA:   3'- -CGUaGG-CGcCCGUUCUGAAGuUGGag -5'
6442 3' -53.4 NC_001847.1 + 103002 0.67 0.934101
Target:  5'- gGCGUgCGCGGGCGcGGCggCGcCCa- -3'
miRNA:   3'- -CGUAgGCGCCCGUuCUGaaGUuGGag -5'
6442 3' -53.4 NC_001847.1 + 76594 0.67 0.933586
Target:  5'- cGCcgCCGCuGGCGgcggcgaAGACcgcggCGGCCUCu -3'
miRNA:   3'- -CGuaGGCGcCCGU-------UCUGaa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 55935 0.67 0.928839
Target:  5'- cGCGUgcCCGUGGGCAuGGGCgagaUCAcggACCUg -3'
miRNA:   3'- -CGUA--GGCGCCCGU-UCUGa---AGU---UGGAg -5'
6442 3' -53.4 NC_001847.1 + 107711 0.67 0.928839
Target:  5'- gGCGcUCGCGGGCGggcaccccgGGGCUaCAACCc- -3'
miRNA:   3'- -CGUaGGCGCCCGU---------UCUGAaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 14901 0.67 0.928839
Target:  5'- cCGUCCGCGcGCAGGcCgacuGCCUCg -3'
miRNA:   3'- cGUAGGCGCcCGUUCuGaaguUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 36111 0.67 0.928839
Target:  5'- uUAUCCGCGGGCGGuGCUcgCcGCC-Cg -3'
miRNA:   3'- cGUAGGCGCCCGUUcUGAa-GuUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 74676 0.67 0.928839
Target:  5'- gGCcgagCCGC-GGCAGGACggCGGCCg- -3'
miRNA:   3'- -CGua--GGCGcCCGUUCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 81233 0.67 0.923324
Target:  5'- gGCAgcggCgGCGGGCcAGGCUg-GGCCUg -3'
miRNA:   3'- -CGUa---GgCGCCCGuUCUGAagUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 107244 0.67 0.923324
Target:  5'- cGCAagCGCGGcCGGGcCggCGACCUCg -3'
miRNA:   3'- -CGUagGCGCCcGUUCuGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 971 0.67 0.923324
Target:  5'- gGCAcCCGgGccGGCGGGGCUUCcGCCg- -3'
miRNA:   3'- -CGUaGGCgC--CCGUUCUGAAGuUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.