miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 123051 0.7 0.8065
Target:  5'- aGUAcggCCGCGGGCGccGGACccgcggcgcuccgCGGCCUCg -3'
miRNA:   3'- -CGUa--GGCGCCCGU--UCUGaa-----------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 89599 0.7 0.82085
Target:  5'- uGCGUgCGCGGGCucuGGCUggccaaguUCGACUUUu -3'
miRNA:   3'- -CGUAgGCGCCCGuu-CUGA--------AGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 64110 0.7 0.82085
Target:  5'- cGUGUCCGCGGcGCcAGACgcgugcgCGGCCg- -3'
miRNA:   3'- -CGUAGGCGCC-CGuUCUGaa-----GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 58908 0.7 0.82085
Target:  5'- uGCG-CCGCGGGCGGGugUugcgCAGCa-- -3'
miRNA:   3'- -CGUaGGCGCCCGUUCugAa---GUUGgag -5'
6442 3' -53.4 NC_001847.1 + 66674 0.7 0.82085
Target:  5'- uGCGcCCGCGcGGCGGGGCccCGGCCg- -3'
miRNA:   3'- -CGUaGGCGC-CCGUUCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 84184 0.7 0.829584
Target:  5'- cGCggCCGCcuuugAGGACUUCAGCCUCg -3'
miRNA:   3'- -CGuaGGCGcccg-UUCUGAAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 52607 0.7 0.829584
Target:  5'- ---cCCGCGGGCGGcGcCUUUGACUUCg -3'
miRNA:   3'- cguaGGCGCCCGUU-CuGAAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 74165 0.7 0.829584
Target:  5'- gGCG-CCGUGGGCGcgcgcagcggGGACgcCAACCUg -3'
miRNA:   3'- -CGUaGGCGCCCGU----------UCUGaaGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 90470 0.69 0.84149
Target:  5'- cCAUCCGCGGcucgccggucacgguGCAggcgGGGCagCAGCCUCc -3'
miRNA:   3'- cGUAGGCGCC---------------CGU----UCUGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 18760 0.69 0.846473
Target:  5'- cGCcgCCGCGGcUAAGGCggCGGCCg- -3'
miRNA:   3'- -CGuaGGCGCCcGUUCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 15925 0.69 0.854612
Target:  5'- uCGUCCGUGGGguAGGCga-AGCC-Cg -3'
miRNA:   3'- cGUAGGCGCCCguUCUGaagUUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 55363 0.69 0.854612
Target:  5'- cGCG-CCGCGGGCGccggAGACggUCGGCg-- -3'
miRNA:   3'- -CGUaGGCGCCCGU----UCUGa-AGUUGgag -5'
6442 3' -53.4 NC_001847.1 + 25103 0.69 0.870241
Target:  5'- ---aCCGCGGuugaGCAAGAUUcgcgCGACCUCc -3'
miRNA:   3'- cguaGGCGCC----CGUUCUGAa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 7731 0.69 0.870241
Target:  5'- cGCAgggCGCGGGCGcggAGGCggCGGCCa- -3'
miRNA:   3'- -CGUag-GCGCCCGU---UCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 61264 0.69 0.870241
Target:  5'- cGCGUCCGCGGcGCGcgcGGGCgccgCGccgccGCCUa -3'
miRNA:   3'- -CGUAGGCGCC-CGU---UCUGaa--GU-----UGGAg -5'
6442 3' -53.4 NC_001847.1 + 51079 0.69 0.870241
Target:  5'- uCGUgCGCGGGCuggucgAGGACcgCGACUUCa -3'
miRNA:   3'- cGUAgGCGCCCG------UUCUGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 52910 0.69 0.870241
Target:  5'- -gGUCCGCGGGCAGcGGCU-CGgggcGCC-Cg -3'
miRNA:   3'- cgUAGGCGCCCGUU-CUGAaGU----UGGaG- -5'
6442 3' -53.4 NC_001847.1 + 79063 0.68 0.876982
Target:  5'- cGCAcCC-CGGGCGcgcucagccgcgcAGGCUUCAgcggcGCCUCc -3'
miRNA:   3'- -CGUaGGcGCCCGU-------------UCUGAAGU-----UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 2093 0.68 0.877719
Target:  5'- cGCGgggcCCGCGcGGCGgcGGGCcgCGAUCUCg -3'
miRNA:   3'- -CGUa---GGCGC-CCGU--UCUGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 17122 0.68 0.877719
Target:  5'- gGCAgguuUCCGCuGGCGcucccGGCUUCGuCCUCg -3'
miRNA:   3'- -CGU----AGGCGcCCGUu----CUGAAGUuGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.