miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 113702 0.72 0.704541
Target:  5'- cGCGUCCGCGuGCGGGACgggguacUCGuacgcgcccagcACCUCg -3'
miRNA:   3'- -CGUAGGCGCcCGUUCUGa------AGU------------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 35565 0.72 0.704541
Target:  5'- cGCGaCCGCgacgaGGGCGccGGGCUggcCAACCUCa -3'
miRNA:   3'- -CGUaGGCG-----CCCGU--UCUGAa--GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 55138 0.72 0.714829
Target:  5'- cGCAUCCgcGCGGGCGcgGGGCgUCAccGCCg- -3'
miRNA:   3'- -CGUAGG--CGCCCGU--UCUGaAGU--UGGag -5'
6442 3' -53.4 NC_001847.1 + 30783 0.72 0.714829
Target:  5'- cGCGUCUGCGGGCGcGGACgcc-GCCg- -3'
miRNA:   3'- -CGUAGGCGCCCGU-UCUGaaguUGGag -5'
6442 3' -53.4 NC_001847.1 + 47824 0.72 0.725041
Target:  5'- -uGUCCGCGGuGCAGuuGACUUCcACgUCg -3'
miRNA:   3'- cgUAGGCGCC-CGUU--CUGAAGuUGgAG- -5'
6442 3' -53.4 NC_001847.1 + 84536 0.71 0.735169
Target:  5'- -gGUUgGCGGGCGGGGCggggCGugcGCCUCg -3'
miRNA:   3'- cgUAGgCGCCCGUUCUGaa--GU---UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 32835 0.71 0.749187
Target:  5'- uCAUCUG-GGGCgAGGACUacgacgccgggcccaUCGACCUCa -3'
miRNA:   3'- cGUAGGCgCCCG-UUCUGA---------------AGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 101512 0.71 0.75513
Target:  5'- uGCA-CCGCGGGUGuuug-UCGACCUCu -3'
miRNA:   3'- -CGUaGGCGCCCGUucugaAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 125574 0.71 0.75513
Target:  5'- cGCggCCGCGGGCGgcGGGCUggaCGGCUg- -3'
miRNA:   3'- -CGuaGGCGCCCGU--UCUGAa--GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 11260 0.71 0.75513
Target:  5'- aGCuugCCGCGGGCGcuGGGCUUCcugaauuACCa- -3'
miRNA:   3'- -CGua-GGCGCCCGU--UCUGAAGu------UGGag -5'
6442 3' -53.4 NC_001847.1 + 52300 0.71 0.764943
Target:  5'- cGCGaCCGCGGGCGcGGGCggcgcCAACCg- -3'
miRNA:   3'- -CGUaGGCGCCCGU-UCUGaa---GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 33896 0.71 0.764943
Target:  5'- cGCGUggCCGCGGGCGugcaGGACcgccuguggCAGCCUUc -3'
miRNA:   3'- -CGUA--GGCGCCCGU----UCUGaa-------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 99013 0.71 0.764943
Target:  5'- cGCGUCCGCGGcGCGcgcGGCUUCGuggaaggcGCC-Ca -3'
miRNA:   3'- -CGUAGGCGCC-CGUu--CUGAAGU--------UGGaG- -5'
6442 3' -53.4 NC_001847.1 + 51345 0.71 0.774631
Target:  5'- cGCGUgCCGCGGGUuGGcgaacaggggcGCUUCGagggcuGCCUCg -3'
miRNA:   3'- -CGUA-GGCGCCCGuUC-----------UGAAGU------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 132762 0.7 0.784183
Target:  5'- cGCGUCaccgccgucuuCGCGGGCGcgcGACUg-GACCUCa -3'
miRNA:   3'- -CGUAG-----------GCGCCCGUu--CUGAagUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 114381 0.7 0.784183
Target:  5'- cGCAUCUGCGcgccgacgaaGGCGAGGCcc--GCCUCa -3'
miRNA:   3'- -CGUAGGCGC----------CCGUUCUGaaguUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 82549 0.7 0.784183
Target:  5'- cGCcgcCCGCGGGCucGGCcUCGGCCg- -3'
miRNA:   3'- -CGua-GGCGCCCGuuCUGaAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 69709 0.7 0.784183
Target:  5'- -gGUCCGCGGcGCGcGGCUgCcGCCUCc -3'
miRNA:   3'- cgUAGGCGCC-CGUuCUGAaGuUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 89289 0.7 0.793591
Target:  5'- cGCG-CCGCGGcCGAGGCcUCGGCCg- -3'
miRNA:   3'- -CGUaGGCGCCcGUUCUGaAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 33394 0.7 0.793591
Target:  5'- gGCggCCGUGGGguGGugUuucUCGacACCUCg -3'
miRNA:   3'- -CGuaGGCGCCCguUCugA---AGU--UGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.