miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 20510 0.67 0.937634
Target:  5'- cGCGUCguCGCGGGCGggggcccacuggaaGGACgUgAACUUCu -3'
miRNA:   3'- -CGUAG--GCGCCCGU--------------UCUGaAgUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 21914 0.67 0.911534
Target:  5'- gGCcgaggCCGCGGGCGAGGCggaggagagGACCg- -3'
miRNA:   3'- -CGua---GGCGCCCGUUCUGaag------UUGGag -5'
6442 3' -53.4 NC_001847.1 + 22219 0.74 0.599673
Target:  5'- cGCGUCCGUGGGCGuGGCgcccgugUAGCCg- -3'
miRNA:   3'- -CGUAGGCGCCCGUuCUGaa-----GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 22418 0.68 0.891973
Target:  5'- uCGUCCGCggGGGCGGGGCccgaGACCa- -3'
miRNA:   3'- cGUAGGCG--CCCGUUCUGaag-UUGGag -5'
6442 3' -53.4 NC_001847.1 + 25103 0.69 0.870241
Target:  5'- ---aCCGCGGuugaGCAAGAUUcgcgCGACCUCc -3'
miRNA:   3'- cguaGGCGCC----CGUUCUGAa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 29495 0.76 0.487257
Target:  5'- cGCucuccggCCGCGGGCGGcGCUUCGGCCg- -3'
miRNA:   3'- -CGua-----GGCGCCCGUUcUGAAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 30605 0.67 0.93911
Target:  5'- cGCGgcuggCCGCGGcGCGGcggcGGCUgaUCGugCUCg -3'
miRNA:   3'- -CGUa----GGCGCC-CGUU----CUGA--AGUugGAG- -5'
6442 3' -53.4 NC_001847.1 + 30783 0.72 0.714829
Target:  5'- cGCGUCUGCGGGCGcGGACgcc-GCCg- -3'
miRNA:   3'- -CGUAGGCGCCCGU-UCUGaaguUGGag -5'
6442 3' -53.4 NC_001847.1 + 32678 0.67 0.938621
Target:  5'- uGCAUCCGCcGGUggcuggaGGGGCgccCGACCUg -3'
miRNA:   3'- -CGUAGGCGcCCG-------UUCUGaa-GUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 32752 0.66 0.948375
Target:  5'- gGCuauuUUCGCGGGCGGcGCUUCGcgacgGCCg- -3'
miRNA:   3'- -CGu---AGGCGCCCGUUcUGAAGU-----UGGag -5'
6442 3' -53.4 NC_001847.1 + 32835 0.71 0.749187
Target:  5'- uCAUCUG-GGGCgAGGACUacgacgccgggcccaUCGACCUCa -3'
miRNA:   3'- cGUAGGCgCCCG-UUCUGA---------------AGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 32983 0.66 0.943867
Target:  5'- gGCG-CCgggGCGGGCAGGGCggccggagCGGCCg- -3'
miRNA:   3'- -CGUaGG---CGCCCGUUCUGaa------GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 33394 0.7 0.793591
Target:  5'- gGCggCCGUGGGguGGugUuucUCGacACCUCg -3'
miRNA:   3'- -CGuaGGCGCCCguUCugA---AGU--UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 33896 0.71 0.764943
Target:  5'- cGCGUggCCGCGGGCGugcaGGACcgccuguggCAGCCUUc -3'
miRNA:   3'- -CGUA--GGCGCCCGU----UCUGaa-------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 34782 0.68 0.884965
Target:  5'- cGCggCCGCGGcGCGcGGCUaCGACC-Cg -3'
miRNA:   3'- -CGuaGGCGCC-CGUuCUGAaGUUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 35243 0.66 0.952636
Target:  5'- gGCggCCgGCGGGCGcgcggcGGAgaUCAGCCg- -3'
miRNA:   3'- -CGuaGG-CGCCCGU------UCUgaAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 35565 0.72 0.704541
Target:  5'- cGCGaCCGCgacgaGGGCGccGGGCUggcCAACCUCa -3'
miRNA:   3'- -CGUaGGCG-----CCCGU--UCUGAa--GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 36111 0.67 0.928839
Target:  5'- uUAUCCGCGGGCGGuGCUcgCcGCC-Cg -3'
miRNA:   3'- cGUAGGCGCCCGUUcUGAa-GuUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 36842 0.66 0.952636
Target:  5'- aCAgCCGCGGGCAAGcCcaCGGCUUg -3'
miRNA:   3'- cGUaGGCGCCCGUUCuGaaGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 38899 0.66 0.960434
Target:  5'- uGCcgCCGCcGGCccuGACUcCGGCCUg -3'
miRNA:   3'- -CGuaGGCGcCCGuu-CUGAaGUUGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.