miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 84184 0.7 0.829584
Target:  5'- cGCggCCGCcuuugAGGACUUCAGCCUCg -3'
miRNA:   3'- -CGuaGGCGcccg-UUCUGAAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 58908 0.7 0.82085
Target:  5'- uGCG-CCGCGGGCGGGugUugcgCAGCa-- -3'
miRNA:   3'- -CGUaGGCGCCCGUUCugAa---GUUGgag -5'
6442 3' -53.4 NC_001847.1 + 30783 0.72 0.714829
Target:  5'- cGCGUCUGCGGGCGcGGACgcc-GCCg- -3'
miRNA:   3'- -CGUAGGCGCCCGU-UCUGaaguUGGag -5'
6442 3' -53.4 NC_001847.1 + 125032 0.74 0.599673
Target:  5'- cGCGUCCGUGGGCGuGGCgcccgugUAGCCg- -3'
miRNA:   3'- -CGUAGGCGCCCGUuCUGaa-----GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 124727 0.68 0.884965
Target:  5'- gGCcgaggCCGCGGGCGAGGCggagagagGACCg- -3'
miRNA:   3'- -CGua---GGCGCCCGUUCUGaag-----UUGGag -5'
6442 3' -53.4 NC_001847.1 + 7731 0.69 0.870241
Target:  5'- cGCAgggCGCGGGCGcggAGGCggCGGCCa- -3'
miRNA:   3'- -CGUag-GCGCCCGU---UCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 52300 0.71 0.764943
Target:  5'- cGCGaCCGCGGGCGcGGGCggcgcCAACCg- -3'
miRNA:   3'- -CGUaGGCGCCCGU-UCUGaa---GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 29495 0.76 0.487257
Target:  5'- cGCucuccggCCGCGGGCGGcGCUUCGGCCg- -3'
miRNA:   3'- -CGua-----GGCGCCCGUUcUGAAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 51079 0.69 0.870241
Target:  5'- uCGUgCGCGGGCuggucgAGGACcgCGACUUCa -3'
miRNA:   3'- cGUAgGCGCCCG------UUCUGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 81976 0.77 0.412069
Target:  5'- uCAUCaCGCGGGCGgugcucggAGACUUCAGCUUg -3'
miRNA:   3'- cGUAG-GCGCCCGU--------UCUGAAGUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 64110 0.7 0.82085
Target:  5'- cGUGUCCGCGGcGCcAGACgcgugcgCGGCCg- -3'
miRNA:   3'- -CGUAGGCGCC-CGuUCUGaa-----GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 18760 0.69 0.846473
Target:  5'- cGCcgCCGCGGcUAAGGCggCGGCCg- -3'
miRNA:   3'- -CGuaGGCGCCcGUUCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 11260 0.71 0.75513
Target:  5'- aGCuugCCGCGGGCGcuGGGCUUCcugaauuACCa- -3'
miRNA:   3'- -CGua-GGCGCCCGU--UCUGAAGu------UGGag -5'
6442 3' -53.4 NC_001847.1 + 55138 0.72 0.714829
Target:  5'- cGCAUCCgcGCGGGCGcgGGGCgUCAccGCCg- -3'
miRNA:   3'- -CGUAGG--CGCCCGU--UCUGaAGU--UGGag -5'
6442 3' -53.4 NC_001847.1 + 52181 0.73 0.66284
Target:  5'- cGCGUCUuccagGCGGGCA--ACUggagCGGCCUCa -3'
miRNA:   3'- -CGUAGG-----CGCCCGUucUGAa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 103914 0.73 0.620715
Target:  5'- cGCggCCGCGGGCGGcGCcgccgCGGCCUCc -3'
miRNA:   3'- -CGuaGGCGCCCGUUcUGaa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 53132 0.68 0.89874
Target:  5'- cCAUCCuCGGGCAgguacAGACguaCAACUUCc -3'
miRNA:   3'- cGUAGGcGCCCGU-----UCUGaa-GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 96943 0.68 0.891973
Target:  5'- gGCcUCCGCGGGCGgcAGGCgcu--CUUCg -3'
miRNA:   3'- -CGuAGGCGCCCGU--UCUGaaguuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 104906 0.68 0.877719
Target:  5'- cGCGgggcCCGCGcGGCGgcGGGCcgCGAUCUCg -3'
miRNA:   3'- -CGUa---GGCGC-CCGU--UCUGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 61264 0.69 0.870241
Target:  5'- cGCGUCCGCGGcGCGcgcGGGCgccgCGccgccGCCUa -3'
miRNA:   3'- -CGUAGGCGCC-CGU---UCUGaa--GU-----UGGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.