miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 107244 0.67 0.923324
Target:  5'- cGCAagCGCGGcCGGGcCggCGACCUCg -3'
miRNA:   3'- -CGUagGCGCCcGUUCuGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 106947 0.66 0.943867
Target:  5'- cGCcgCCGUGGcGCGcAGGCgcgCGGCCg- -3'
miRNA:   3'- -CGuaGGCGCC-CGU-UCUGaa-GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 106672 0.66 0.948375
Target:  5'- gGCGUCCGCGGcGCGucgugccACggCGGCCa- -3'
miRNA:   3'- -CGUAGGCGCC-CGUuc-----UGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 105677 0.76 0.477491
Target:  5'- cGCcucggCCGCGGGCGGcGCUUCGGCCg- -3'
miRNA:   3'- -CGua---GGCGCCCGUUcUGAAGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 105621 0.67 0.934101
Target:  5'- cGCGcCgCGCGGGCGAG-CUcugCGGCCg- -3'
miRNA:   3'- -CGUaG-GCGCCCGUUCuGAa--GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 104906 0.68 0.877719
Target:  5'- cGCGgggcCCGCGcGGCGgcGGGCcgCGAUCUCg -3'
miRNA:   3'- -CGUa---GGCGC-CCGU--UCUGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 103914 0.73 0.620715
Target:  5'- cGCggCCGCGGGCGGcGCcgccgCGGCCUCc -3'
miRNA:   3'- -CGuaGGCGCCCGUUcUGaa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 103784 0.67 0.934101
Target:  5'- gGCAcCCgGCcGGCGGGGCUUCcGCCg- -3'
miRNA:   3'- -CGUaGG-CGcCCGUUCUGAAGuUGGag -5'
6442 3' -53.4 NC_001847.1 + 103002 0.67 0.934101
Target:  5'- gGCGUgCGCGGGCGcGGCggCGcCCa- -3'
miRNA:   3'- -CGUAgGCGCCCGUuCUGaaGUuGGag -5'
6442 3' -53.4 NC_001847.1 + 101546 0.68 0.901378
Target:  5'- gGCGUCCaGCuGGcGCAGGACgucgUCGgcaccgcgcacggccGCCUCc -3'
miRNA:   3'- -CGUAGG-CG-CC-CGUUCUGa---AGU---------------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 101512 0.71 0.75513
Target:  5'- uGCA-CCGCGGGUGuuug-UCGACCUCu -3'
miRNA:   3'- -CGUaGGCGCCCGUucugaAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 99931 0.72 0.694189
Target:  5'- aCGUCCGCGcGCAGGGCgccCAGCCg- -3'
miRNA:   3'- cGUAGGCGCcCGUUCUGaa-GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 99848 0.66 0.956264
Target:  5'- cGCG-CCGCucGGCGGGGCUgcgCAguacguuACCUCu -3'
miRNA:   3'- -CGUaGGCGc-CCGUUCUGAa--GU-------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 99013 0.71 0.764943
Target:  5'- cGCGUCCGCGGcGCGcgcGGCUUCGuggaaggcGCC-Ca -3'
miRNA:   3'- -CGUAGGCGCC-CGUu--CUGAAGU--------UGGaG- -5'
6442 3' -53.4 NC_001847.1 + 98375 0.66 0.956655
Target:  5'- cGCGU-CGCGGGCGc-GCU-CGAUCUCc -3'
miRNA:   3'- -CGUAgGCGCCCGUucUGAaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 96943 0.68 0.891973
Target:  5'- gGCcUCCGCGGGCGgcAGGCgcu--CUUCg -3'
miRNA:   3'- -CGuAGGCGCCCGU--UCUGaaguuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 94636 0.67 0.93911
Target:  5'- cGCAgCCGcCGGGCAAuuuUUUCGcagGCCUCc -3'
miRNA:   3'- -CGUaGGC-GCCCGUUcu-GAAGU---UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 92031 0.66 0.943867
Target:  5'- cCGUCUGCGGGCAccGCcggcGCCUCc -3'
miRNA:   3'- cGUAGGCGCCCGUucUGaaguUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 90470 0.69 0.84149
Target:  5'- cCAUCCGCGGcucgccggucacgguGCAggcgGGGCagCAGCCUCc -3'
miRNA:   3'- cGUAGGCGCC---------------CGU----UCUGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 89599 0.7 0.82085
Target:  5'- uGCGUgCGCGGGCucuGGCUggccaaguUCGACUUUu -3'
miRNA:   3'- -CGUAgGCGCCCGuu-CUGA--------AGUUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.