miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 134549 0.72 0.683781
Target:  5'- cGCGU-CGuCGGGCAGGACacaaagaCGGCCUCg -3'
miRNA:   3'- -CGUAgGC-GCCCGUUCUGaa-----GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 133418 0.67 0.93911
Target:  5'- cGCGgcuggCCGCGGcGCGGcggcGGCUgaUCGugCUCg -3'
miRNA:   3'- -CGUa----GGCGCC-CGUU----CUGA--AGUugGAG- -5'
6442 3' -53.4 NC_001847.1 + 132762 0.7 0.784183
Target:  5'- cGCGUCaccgccgucuuCGCGGGCGcgcGACUg-GACCUCa -3'
miRNA:   3'- -CGUAG-----------GCGCCCGUu--CUGAagUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 125574 0.71 0.75513
Target:  5'- cGCggCCGCGGGCGgcGGGCUggaCGGCUg- -3'
miRNA:   3'- -CGuaGGCGCCCGU--UCUGAa--GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 125231 0.68 0.891973
Target:  5'- uCGUCCGCggGGGCGGGGCccgaGACCa- -3'
miRNA:   3'- cGUAGGCG--CCCGUUCUGaag-UUGGag -5'
6442 3' -53.4 NC_001847.1 + 125032 0.74 0.599673
Target:  5'- cGCGUCCGUGGGCGuGGCgcccgugUAGCCg- -3'
miRNA:   3'- -CGUAGGCGCCCGUuCUGaa-----GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 124727 0.68 0.884965
Target:  5'- gGCcgaggCCGCGGGCGAGGCggagagagGACCg- -3'
miRNA:   3'- -CGua---GGCGCCCGUUCUGaag-----UUGGag -5'
6442 3' -53.4 NC_001847.1 + 123522 0.66 0.956655
Target:  5'- gGCugCCGCGGGCucGGCUaaGGCCa- -3'
miRNA:   3'- -CGuaGGCGCCCGuuCUGAagUUGGag -5'
6442 3' -53.4 NC_001847.1 + 123474 0.74 0.599673
Target:  5'- gGCcgCCGCGGGCucGGCUggGGCCg- -3'
miRNA:   3'- -CGuaGGCGCCCGuuCUGAagUUGGag -5'
6442 3' -53.4 NC_001847.1 + 123093 0.68 0.89874
Target:  5'- gGCGUCCGCaGcGcGCAGGGCgucCAGCgCUCc -3'
miRNA:   3'- -CGUAGGCG-C-C-CGUUCUGaa-GUUG-GAG- -5'
6442 3' -53.4 NC_001847.1 + 123051 0.7 0.8065
Target:  5'- aGUAcggCCGCGGGCGccGGACccgcggcgcuccgCGGCCUCg -3'
miRNA:   3'- -CGUa--GGCGCCCGU--UCUGaa-----------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 120614 0.67 0.938621
Target:  5'- gGCA-CCGCGGGCAgcgagcgccgccgAGACgUCuuucCCUUg -3'
miRNA:   3'- -CGUaGGCGCCCGU-------------UCUGaAGuu--GGAG- -5'
6442 3' -53.4 NC_001847.1 + 119572 0.66 0.956655
Target:  5'- --cUCUGCGGGCAGcGGCggccgCGGCC-Cg -3'
miRNA:   3'- cguAGGCGCCCGUU-CUGaa---GUUGGaG- -5'
6442 3' -53.4 NC_001847.1 + 117625 0.73 0.641794
Target:  5'- cGCAUCCGCGGu---GGCUUUggAACCUCc -3'
miRNA:   3'- -CGUAGGCGCCcguuCUGAAG--UUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 116651 0.68 0.89874
Target:  5'- gGCAgCCGCGGGCAc-GCUggUGGCCUg -3'
miRNA:   3'- -CGUaGGCGCCCGUucUGAa-GUUGGAg -5'
6442 3' -53.4 NC_001847.1 + 116484 0.68 0.884965
Target:  5'- aGCGU-CGCGGGCGGGcACggcgUCGcgcucgccgagcACCUCu -3'
miRNA:   3'- -CGUAgGCGCCCGUUC-UGa---AGU------------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 114428 0.66 0.960434
Target:  5'- aGCgGUCCGCcaGCGGGGCcUCGuCCUCg -3'
miRNA:   3'- -CG-UAGGCGccCGUUCUGaAGUuGGAG- -5'
6442 3' -53.4 NC_001847.1 + 114381 0.7 0.784183
Target:  5'- cGCAUCUGCGcgccgacgaaGGCGAGGCcc--GCCUCa -3'
miRNA:   3'- -CGUAGGCGC----------CCGUUCUGaaguUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 113702 0.72 0.704541
Target:  5'- cGCGUCCGCGuGCGGGACgggguacUCGuacgcgcccagcACCUCg -3'
miRNA:   3'- -CGUAGGCGCcCGUUCUGa------AGU------------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 107711 0.67 0.928839
Target:  5'- gGCGcUCGCGGGCGggcaccccgGGGCUaCAACCc- -3'
miRNA:   3'- -CGUaGGCGCCCGU---------UCUGAaGUUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.