miRNA display CGI


Results 41 - 60 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 44777 0.66 0.943867
Target:  5'- cCAUCCGCGcgcuuGGCGGGACggacgacggCGGCUUUg -3'
miRNA:   3'- cGUAGGCGC-----CCGUUCUGaa-------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 47824 0.72 0.725041
Target:  5'- -uGUCCGCGGuGCAGuuGACUUCcACgUCg -3'
miRNA:   3'- cgUAGGCGCC-CGUU--CUGAAGuUGgAG- -5'
6442 3' -53.4 NC_001847.1 + 48637 0.66 0.9457
Target:  5'- ---gCCGCGgcGGCGGGGCgccgccgcccccgCAGCCUCg -3'
miRNA:   3'- cguaGGCGC--CCGUUCUGaa-----------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 48780 0.66 0.943867
Target:  5'- -aAUCCGCGGGCAccGCcgcaaCAGCCg- -3'
miRNA:   3'- cgUAGGCGCCCGUucUGaa---GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 49056 0.68 0.891973
Target:  5'- cGCAgcucacggCCGCGGGC--GGCggCAGCCg- -3'
miRNA:   3'- -CGUa-------GGCGCCCGuuCUGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 51079 0.69 0.870241
Target:  5'- uCGUgCGCGGGCuggucgAGGACcgCGACUUCa -3'
miRNA:   3'- cGUAgGCGCCCG------UUCUGaaGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 51217 0.66 0.943867
Target:  5'- uGCuggCCGUGGuGCAAGAuCUagcgcUCAGCCa- -3'
miRNA:   3'- -CGua-GGCGCC-CGUUCU-GA-----AGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 51258 0.68 0.877719
Target:  5'- gGCAucuUCUGCGGGCAgccgguGGACgggcgCAACUUUc -3'
miRNA:   3'- -CGU---AGGCGCCCGU------UCUGaa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 51345 0.71 0.774631
Target:  5'- cGCGUgCCGCGGGUuGGcgaacaggggcGCUUCGagggcuGCCUCg -3'
miRNA:   3'- -CGUA-GGCGCCCGuUC-----------UGAAGU------UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 52181 0.73 0.66284
Target:  5'- cGCGUCUuccagGCGGGCA--ACUggagCGGCCUCa -3'
miRNA:   3'- -CGUAGG-----CGCCCGUucUGAa---GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 52300 0.71 0.764943
Target:  5'- cGCGaCCGCGGGCGcGGGCggcgcCAACCg- -3'
miRNA:   3'- -CGUaGGCGCCCGU-UCUGaa---GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 52607 0.7 0.829584
Target:  5'- ---cCCGCGGGCGGcGcCUUUGACUUCg -3'
miRNA:   3'- cguaGGCGCCCGUU-CuGAAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 52910 0.69 0.870241
Target:  5'- -gGUCCGCGGGCAGcGGCU-CGgggcGCC-Cg -3'
miRNA:   3'- cgUAGGCGCCCGUU-CUGAaGU----UGGaG- -5'
6442 3' -53.4 NC_001847.1 + 53132 0.68 0.89874
Target:  5'- cCAUCCuCGGGCAgguacAGACguaCAACUUCc -3'
miRNA:   3'- cGUAGGcGCCCGU-----UCUGaa-GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 53370 0.74 0.610186
Target:  5'- cGCGUCauaCGCGGGCAGGGCUagCuGCCg- -3'
miRNA:   3'- -CGUAG---GCGCCCGUUCUGAa-GuUGGag -5'
6442 3' -53.4 NC_001847.1 + 53640 0.67 0.93911
Target:  5'- cGCGUCCGCgacaaagaccGGGCAcccGGGCcgcUCAACUg- -3'
miRNA:   3'- -CGUAGGCG----------CCCGU---UCUGa--AGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 54392 0.81 0.274415
Target:  5'- gGCggCCGCGGGCGAGGCgggcgccgccgcggUUGGCCUCg -3'
miRNA:   3'- -CGuaGGCGCCCGUUCUGa-------------AGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 54701 0.67 0.93911
Target:  5'- gGCGcCCGCGGGgAGGACgacgcgcgggUCcccuuCCUCg -3'
miRNA:   3'- -CGUaGGCGCCCgUUCUGa---------AGuu---GGAG- -5'
6442 3' -53.4 NC_001847.1 + 54818 0.66 0.947936
Target:  5'- gGCGagCGCGGGCAcggugguGGACaaccgcGCCUCg -3'
miRNA:   3'- -CGUagGCGCCCGU-------UCUGaagu--UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 55138 0.72 0.714829
Target:  5'- cGCAUCCgcGCGGGCGcgGGGCgUCAccGCCg- -3'
miRNA:   3'- -CGUAGG--CGCCCGU--UCUGaAGU--UGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.