miRNA display CGI


Results 21 - 40 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6442 3' -53.4 NC_001847.1 + 68503 0.66 0.952636
Target:  5'- gGCG-CCGC--GCGAGAacUCAACCUCg -3'
miRNA:   3'- -CGUaGGCGccCGUUCUgaAGUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 106672 0.66 0.948375
Target:  5'- gGCGUCCGCGGcGCGucgugccACggCGGCCa- -3'
miRNA:   3'- -CGUAGGCGCC-CGUuc-----UGaaGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 32752 0.66 0.948375
Target:  5'- gGCuauuUUCGCGGGCGGcGCUUCGcgacgGCCg- -3'
miRNA:   3'- -CGu---AGGCGCCCGUUcUGAAGU-----UGGag -5'
6442 3' -53.4 NC_001847.1 + 73858 0.66 0.948375
Target:  5'- cGCcgCCGCGGugcGCGGGGCgcgUCAguuccGCCg- -3'
miRNA:   3'- -CGuaGGCGCC---CGUUCUGa--AGU-----UGGag -5'
6442 3' -53.4 NC_001847.1 + 54818 0.66 0.947936
Target:  5'- gGCGagCGCGGGCAcggugguGGACaaccgcGCCUCg -3'
miRNA:   3'- -CGUagGCGCCCGU-------UCUGaagu--UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 75366 0.66 0.947049
Target:  5'- cGCGUCUcgGCGGGCAugggcacggcaccGGACgcggccagcgagUCGAgCUCg -3'
miRNA:   3'- -CGUAGG--CGCCCGU-------------UCUGa-----------AGUUgGAG- -5'
6442 3' -53.4 NC_001847.1 + 48637 0.66 0.9457
Target:  5'- ---gCCGCGgcGGCGGGGCgccgccgcccccgCAGCCUCg -3'
miRNA:   3'- cguaGGCGC--CCGUUCUGaa-----------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 51217 0.66 0.943867
Target:  5'- uGCuggCCGUGGuGCAAGAuCUagcgcUCAGCCa- -3'
miRNA:   3'- -CGua-GGCGCC-CGUUCU-GA-----AGUUGGag -5'
6442 3' -53.4 NC_001847.1 + 92031 0.66 0.943867
Target:  5'- cCGUCUGCGGGCAccGCcggcGCCUCc -3'
miRNA:   3'- cGUAGGCGCCCGUucUGaaguUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 48780 0.66 0.943867
Target:  5'- -aAUCCGCGGGCAccGCcgcaaCAGCCg- -3'
miRNA:   3'- cgUAGGCGCCCGUucUGaa---GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 44777 0.66 0.943867
Target:  5'- cCAUCCGCGcgcuuGGCGGGACggacgacggCGGCUUUg -3'
miRNA:   3'- cGUAGGCGC-----CCGUUCUGaa-------GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 106947 0.66 0.943867
Target:  5'- cGCcgCCGUGGcGCGcAGGCgcgCGGCCg- -3'
miRNA:   3'- -CGuaGGCGCC-CGU-UCUGaa-GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 79562 0.66 0.943867
Target:  5'- gGCucgCgGgGGGCGccGGGCUcgCGGCCUCu -3'
miRNA:   3'- -CGua-GgCgCCCGU--UCUGAa-GUUGGAG- -5'
6442 3' -53.4 NC_001847.1 + 32983 0.66 0.943867
Target:  5'- gGCG-CCgggGCGGGCAGGGCggccggagCGGCCg- -3'
miRNA:   3'- -CGUaGG---CGCCCGUUCUGaa------GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 87545 0.66 0.943867
Target:  5'- aGUAUUCGCGGGCAucuACcgcCAcuacGCCUCg -3'
miRNA:   3'- -CGUAGGCGCCCGUuc-UGaa-GU----UGGAG- -5'
6442 3' -53.4 NC_001847.1 + 54701 0.67 0.93911
Target:  5'- gGCGcCCGCGGGgAGGACgacgcgcgggUCcccuuCCUCg -3'
miRNA:   3'- -CGUaGGCGCCCgUUCUGa---------AGuu---GGAG- -5'
6442 3' -53.4 NC_001847.1 + 133418 0.67 0.93911
Target:  5'- cGCGgcuggCCGCGGcGCGGcggcGGCUgaUCGugCUCg -3'
miRNA:   3'- -CGUa----GGCGCC-CGUU----CUGA--AGUugGAG- -5'
6442 3' -53.4 NC_001847.1 + 30605 0.67 0.93911
Target:  5'- cGCGgcuggCCGCGGcGCGGcggcGGCUgaUCGugCUCg -3'
miRNA:   3'- -CGUa----GGCGCC-CGUU----CUGA--AGUugGAG- -5'
6442 3' -53.4 NC_001847.1 + 18955 0.67 0.93911
Target:  5'- gGCGUCCGgGcGGCGAcGACcagcgCGGCCg- -3'
miRNA:   3'- -CGUAGGCgC-CCGUU-CUGaa---GUUGGag -5'
6442 3' -53.4 NC_001847.1 + 53640 0.67 0.93911
Target:  5'- cGCGUCCGCgacaaagaccGGGCAcccGGGCcgcUCAACUg- -3'
miRNA:   3'- -CGUAGGCG----------CCCGU---UCUGa--AGUUGGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.