miRNA display CGI


Results 21 - 40 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 3' -56.3 NC_001847.1 + 15967 0.73 0.488017
Target:  5'- --aAGGGGGUG-UGCGGuaGCGGCAGUa -3'
miRNA:   3'- acaUCUCCCACuGCGCU--UGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 16626 0.68 0.768499
Target:  5'- -uUGGGGGGgGGCGCG-GCGGCuuuGCc -3'
miRNA:   3'- acAUCUCCCaCUGCGCuUGCCGu--CGc -5'
6445 3' -56.3 NC_001847.1 + 16828 0.69 0.719869
Target:  5'- --cGGAucGGUGGCGCGGGCaucggGGCGGCGc -3'
miRNA:   3'- acaUCUc-CCACUGCGCUUG-----CCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 17889 0.7 0.689708
Target:  5'- -----cGGGcGGgGCGGGCGGCGGCGu -3'
miRNA:   3'- acaucuCCCaCUgCGCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 19812 0.66 0.855504
Target:  5'- gGUGGc-GGUGGCG-GGGCGGCAGa- -3'
miRNA:   3'- aCAUCucCCACUGCgCUUGCCGUCgc -5'
6445 3' -56.3 NC_001847.1 + 21871 0.66 0.891864
Target:  5'- --aGGAGGuGgaagagGACGCGGugGGCGaCGa -3'
miRNA:   3'- acaUCUCC-Ca-----CUGCGCUugCCGUcGC- -5'
6445 3' -56.3 NC_001847.1 + 21934 0.66 0.891864
Target:  5'- --cGGAGGagagGAcCGCGGcucGCGGCGGCa -3'
miRNA:   3'- acaUCUCCca--CU-GCGCU---UGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 22111 0.68 0.805258
Target:  5'- ---cGGGGGcgacagcgGGCGCGcccugggcccGGCGGCGGCGg -3'
miRNA:   3'- acauCUCCCa-------CUGCGC----------UUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 22331 0.66 0.870699
Target:  5'- --aAGAGGGUguuGACGuCGAugGcgaggcGCAGCGc -3'
miRNA:   3'- acaUCUCCCA---CUGC-GCUugC------CGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 27526 0.72 0.577152
Target:  5'- cGgcGGcGGG-GACGCccgaGAACGGCGGCGc -3'
miRNA:   3'- aCauCU-CCCaCUGCG----CUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 27713 0.66 0.877976
Target:  5'- cGgcGGGGGcaagGGCgucaGCGGcggaagccGCGGCGGCGg -3'
miRNA:   3'- aCauCUCCCa---CUG----CGCU--------UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 27753 0.73 0.497631
Target:  5'- gGUGGGcGGGgagGACGCGGAgaGCAGCGa -3'
miRNA:   3'- aCAUCU-CCCa--CUGCGCUUgcCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 27920 0.67 0.846795
Target:  5'- --cGGAGGGcgcggagGACGCGGacaggccugggccGCGGCGcGCGc -3'
miRNA:   3'- acaUCUCCCa------CUGCGCU-------------UGCCGU-CGC- -5'
6445 3' -56.3 NC_001847.1 + 28078 0.68 0.805258
Target:  5'- --aAGcGGGGacUGAgGCGGGgGGCGGCGg -3'
miRNA:   3'- acaUC-UCCC--ACUgCGCUUgCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 29004 0.74 0.441345
Target:  5'- --cGGAGGccGGCGCcGGCGGCAGCGg -3'
miRNA:   3'- acaUCUCCcaCUGCGcUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 29106 0.68 0.768499
Target:  5'- cGgcGcGGGcgGcGCGCGAGCGGCuGCGc -3'
miRNA:   3'- aCauCuCCCa-C-UGCGCUUGCCGuCGC- -5'
6445 3' -56.3 NC_001847.1 + 29874 0.7 0.679545
Target:  5'- --gGGAcGGG-GACGgGGACGGCgaGGCGg -3'
miRNA:   3'- acaUCU-CCCaCUGCgCUUGCCG--UCGC- -5'
6445 3' -56.3 NC_001847.1 + 30588 0.69 0.74838
Target:  5'- gGUGGAGuaccucugcgcgcGGcUGGcCGCGGcGCGGCGGCGg -3'
miRNA:   3'- aCAUCUC-------------CC-ACU-GCGCU-UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 31334 0.68 0.805258
Target:  5'- gGUGGAGcGcGUGcCGCcgcCGGCGGCGg -3'
miRNA:   3'- aCAUCUC-C-CACuGCGcuuGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 31618 0.79 0.233862
Target:  5'- --gGGAGGG-GGCGCG-ACGGCGGCa -3'
miRNA:   3'- acaUCUCCCaCUGCGCuUGCCGUCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.