miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 3' -56.3 NC_001847.1 + 416 0.74 0.469056
Target:  5'- ---cGAGGGcccggGGCggGCGGGCGGCGGCGg -3'
miRNA:   3'- acauCUCCCa----CUG--CGCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 528 0.68 0.75898
Target:  5'- --cGGAGGGcaagugcccGACGCGGGgaacgUGGCGGCGg -3'
miRNA:   3'- acaUCUCCCa--------CUGCGCUU-----GCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 3521 0.66 0.863206
Target:  5'- gUGUAcGGGccGUGGCcgacuacggccGCGAgcGCGGCGGCGg -3'
miRNA:   3'- -ACAUcUCC--CACUG-----------CGCU--UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 3893 0.7 0.660136
Target:  5'- --cGGAGcgagccguugcgcgcGGUGGCGCGGACgcacgcacagcgcuGGCAGCGg -3'
miRNA:   3'- acaUCUC---------------CCACUGCGCUUG--------------CCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 3949 0.69 0.699822
Target:  5'- cGgcGGGGGgGGCGCcgucucCGGCGGCGa -3'
miRNA:   3'- aCauCUCCCaCUGCGcuu---GCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 4864 0.71 0.63859
Target:  5'- --gGGAGGGgggGGgGCGGcgGGCAGCGg -3'
miRNA:   3'- acaUCUCCCa--CUgCGCUugCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 5026 0.69 0.719869
Target:  5'- --cGGAGGG-GAagcucggGCGAcCGGCGGCGg -3'
miRNA:   3'- acaUCUCCCaCUg------CGCUuGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 5140 0.69 0.709879
Target:  5'- uUGUAGAagaagcagGGGUG-UGCGGGCcaggcaucGGCGGCGa -3'
miRNA:   3'- -ACAUCU--------CCCACuGCGCUUG--------CCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 5528 0.66 0.863206
Target:  5'- -cUAGGGcGGcGACGCucguGACGGCGGCc -3'
miRNA:   3'- acAUCUC-CCaCUGCGc---UUGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 6145 0.66 0.870699
Target:  5'- --cGGGGGGcucgGugGCGGugACGGCGcGCa -3'
miRNA:   3'- acaUCUCCCa---CugCGCU--UGCCGU-CGc -5'
6445 3' -56.3 NC_001847.1 + 6947 0.7 0.689708
Target:  5'- --aAGAcGGGccaGGCGCGGggucGCGGCGGCGc -3'
miRNA:   3'- acaUCU-CCCa--CUGCGCU----UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 7390 0.79 0.222695
Target:  5'- aGUGGAGGacGUGGCGCGcuCGGCAGaCGg -3'
miRNA:   3'- aCAUCUCC--CACUGCGCuuGCCGUC-GC- -5'
6445 3' -56.3 NC_001847.1 + 7728 0.7 0.659111
Target:  5'- aGgcGcAGGGcgcgGGCGCGGA-GGCGGCGg -3'
miRNA:   3'- aCauC-UCCCa---CUGCGCUUgCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 10158 0.67 0.847597
Target:  5'- --gGGAGGGcuuuuucGACGCGcGCGGCuuaAGCa -3'
miRNA:   3'- acaUCUCCCa------CUGCGCuUGCCG---UCGc -5'
6445 3' -56.3 NC_001847.1 + 10273 0.74 0.459718
Target:  5'- ---cGAGuGcGACGUGAGCGGCAGCGa -3'
miRNA:   3'- acauCUCcCaCUGCGCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 10338 0.74 0.459718
Target:  5'- --aGGAGGGgGAgGaGAACGGCGGCGa -3'
miRNA:   3'- acaUCUCCCaCUgCgCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 11328 0.66 0.891864
Target:  5'- cGgcGGGcGGcUGGCGCcgGAGCGGgAGCa -3'
miRNA:   3'- aCauCUC-CC-ACUGCG--CUUGCCgUCGc -5'
6445 3' -56.3 NC_001847.1 + 13816 0.66 0.891864
Target:  5'- gUGUAcGGGGGccGGCGUGuGACGGUGcGCGa -3'
miRNA:   3'- -ACAU-CUCCCa-CUGCGC-UUGCCGU-CGC- -5'
6445 3' -56.3 NC_001847.1 + 15557 0.7 0.645778
Target:  5'- -----cGGGUGGCGCGGgggaacccccaucgGCGGCAGgCGg -3'
miRNA:   3'- acaucuCCCACUGCGCU--------------UGCCGUC-GC- -5'
6445 3' -56.3 NC_001847.1 + 15745 0.71 0.628318
Target:  5'- -cUGGAGGGcgccuaugccGACGCGGGCGGCccgcuuucgccGGCGg -3'
miRNA:   3'- acAUCUCCCa---------CUGCGCUUGCCG-----------UCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.