miRNA display CGI


Results 1 - 20 of 161 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 3' -56.3 NC_001847.1 + 56579 1.08 0.002729
Target:  5'- aUGUAGAGGGUGACGCGAACGGCAGCGc -3'
miRNA:   3'- -ACAUCUCCCACUGCGCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 88860 0.82 0.145049
Target:  5'- cGUAGAGGaaGACGCGGugcgcGCGGCGGCGg -3'
miRNA:   3'- aCAUCUCCcaCUGCGCU-----UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 7390 0.79 0.222695
Target:  5'- aGUGGAGGacGUGGCGCGcuCGGCAGaCGg -3'
miRNA:   3'- aCAUCUCC--CACUGCGCuuGCCGUC-GC- -5'
6445 3' -56.3 NC_001847.1 + 134431 0.79 0.233862
Target:  5'- --gGGAGGG-GGCGCG-ACGGCGGCa -3'
miRNA:   3'- acaUCUCCCaCUGCGCuUGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 31618 0.79 0.233862
Target:  5'- --gGGAGGG-GGCGCG-ACGGCGGCa -3'
miRNA:   3'- acaUCUCCCaCUGCGCuUGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 59903 0.76 0.348346
Target:  5'- --aGGAGGGcGGCGCGcGCGcGCGGCGa -3'
miRNA:   3'- acaUCUCCCaCUGCGCuUGC-CGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 95632 0.76 0.3562
Target:  5'- cUGUGGcGGGccgcucUGGCGCGGGgGGCGGCGc -3'
miRNA:   3'- -ACAUCuCCC------ACUGCGCUUgCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 32784 0.74 0.432316
Target:  5'- cUGUGGGGGGagggccgGGgGCGGACGGC-GCGu -3'
miRNA:   3'- -ACAUCUCCCa------CUgCGCUUGCCGuCGC- -5'
6445 3' -56.3 NC_001847.1 + 96807 0.74 0.432316
Target:  5'- gGUcGGGGG--GCGCGcAGCGGCGGCGa -3'
miRNA:   3'- aCAuCUCCCacUGCGC-UUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 96836 0.74 0.441345
Target:  5'- -uUGGGGGGgaaagGGCGCGucgggGGCGGCGGUGg -3'
miRNA:   3'- acAUCUCCCa----CUGCGC-----UUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 59023 0.74 0.441345
Target:  5'- cGUGcGAcGGUGGCGgGuGCGGCGGCGg -3'
miRNA:   3'- aCAU-CUcCCACUGCgCuUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 131817 0.74 0.441345
Target:  5'- --cGGAGGccGGCGCcGGCGGCAGCGg -3'
miRNA:   3'- acaUCUCCcaCUGCGcUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 29004 0.74 0.441345
Target:  5'- --cGGAGGccGGCGCcGGCGGCAGCGg -3'
miRNA:   3'- acaUCUCCcaCUGCGcUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 113086 0.74 0.459718
Target:  5'- ---cGAGuGcGACGUGAGCGGCAGCGa -3'
miRNA:   3'- acauCUCcCaCUGCGCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 34464 0.74 0.459718
Target:  5'- gGUGGccgccGGcGGcgagGAUGCGGACGGCGGCGa -3'
miRNA:   3'- aCAUC-----UC-CCa---CUGCGCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 32652 0.74 0.459718
Target:  5'- -cUGGAGGGcGAgGUGGACGGCgccGGCGg -3'
miRNA:   3'- acAUCUCCCaCUgCGCUUGCCG---UCGC- -5'
6445 3' -56.3 NC_001847.1 + 113151 0.74 0.459718
Target:  5'- --aGGAGGGgGAgGaGAACGGCGGCGa -3'
miRNA:   3'- acaUCUCCCaCUgCgCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 10273 0.74 0.459718
Target:  5'- ---cGAGuGcGACGUGAGCGGCAGCGa -3'
miRNA:   3'- acauCUCcCaCUGCGCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 10338 0.74 0.459718
Target:  5'- --aGGAGGGgGAgGaGAACGGCGGCGa -3'
miRNA:   3'- acaUCUCCCaCUgCgCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 416 0.74 0.469056
Target:  5'- ---cGAGGGcccggGGCggGCGGGCGGCGGCGg -3'
miRNA:   3'- acauCUCCCa----CUG--CGCUUGCCGUCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.