Results 1 - 20 of 161 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6445 | 3' | -56.3 | NC_001847.1 | + | 88860 | 0.82 | 0.145049 |
Target: 5'- cGUAGAGGaaGACGCGGugcgcGCGGCGGCGg -3' miRNA: 3'- aCAUCUCCcaCUGCGCU-----UGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 102691 | 0.72 | 0.546869 |
Target: 5'- gGgcGGGGGcagGGCGcCGGGCGgGCGGCGa -3' miRNA: 3'- aCauCUCCCa--CUGC-GCUUGC-CGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 36983 | 0.72 | 0.556913 |
Target: 5'- cGgcGAGcGGgcccGCGcCGAGCGGCGGCGg -3' miRNA: 3'- aCauCUC-CCac--UGC-GCUUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 124684 | 0.66 | 0.891864 |
Target: 5'- --aGGAGGuGgaagagGACGCGGugGGCGaCGa -3' miRNA: 3'- acaUCUCC-Ca-----CUGCGCUugCCGUcGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 59023 | 0.74 | 0.441345 |
Target: 5'- cGUGcGAcGGUGGCGgGuGCGGCGGCGg -3' miRNA: 3'- aCAU-CUcCCACUGCgCuUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 96836 | 0.74 | 0.441345 |
Target: 5'- -uUGGGGGGgaaagGGCGCGucgggGGCGGCGGUGg -3' miRNA: 3'- acAUCUCCCa----CUGCGC-----UUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 32652 | 0.74 | 0.459718 |
Target: 5'- -cUGGAGGGcGAgGUGGACGGCgccGGCGg -3' miRNA: 3'- acAUCUCCCaCUgCGCUUGCCG---UCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 34464 | 0.74 | 0.459718 |
Target: 5'- gGUGGccgccGGcGGcgagGAUGCGGACGGCGGCGa -3' miRNA: 3'- aCAUC-----UC-CCa---CUGCGCUUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 103229 | 0.74 | 0.469056 |
Target: 5'- ---cGAGGGcccggGGCggGCGGGCGGCGGCGg -3' miRNA: 3'- acauCUCCCa----CUG--CGCUUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 34509 | 0.72 | 0.536883 |
Target: 5'- ---cGAGGccGACGCGGACGGCgccGGCGa -3' miRNA: 3'- acauCUCCcaCUGCGCUUGCCG---UCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 130566 | 0.73 | 0.497631 |
Target: 5'- gGUGGGcGGGgagGACGCGGAgaGCAGCGa -3' miRNA: 3'- aCAUCU-CCCa--CUGCGCUUgcCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 113151 | 0.74 | 0.459718 |
Target: 5'- --aGGAGGGgGAgGaGAACGGCGGCGa -3' miRNA: 3'- acaUCUCCCaCUgCgCUUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 7390 | 0.79 | 0.222695 |
Target: 5'- aGUGGAGGacGUGGCGCGcuCGGCAGaCGg -3' miRNA: 3'- aCAUCUCC--CACUGCGCuuGCCGUC-GC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 80838 | 0.73 | 0.526961 |
Target: 5'- -cUGGGGGGgcaGAUcCGGGCGGCGGCGc -3' miRNA: 3'- acAUCUCCCa--CUGcGCUUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 134431 | 0.79 | 0.233862 |
Target: 5'- --gGGAGGG-GGCGCG-ACGGCGGCa -3' miRNA: 3'- acaUCUCCCaCUGCGCuUGCCGUCGc -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 113086 | 0.74 | 0.459718 |
Target: 5'- ---cGAGuGcGACGUGAGCGGCAGCGa -3' miRNA: 3'- acauCUCcCaCUGCGCUUGCCGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 102645 | 0.73 | 0.526961 |
Target: 5'- cGUcucGGGGUGACGCgccggGAGCGGCcGCGa -3' miRNA: 3'- aCAuc-UCCCACUGCG-----CUUGCCGuCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 43240 | 0.72 | 0.546869 |
Target: 5'- gGUGGGGGc--GCGCGGGCGGC-GCGg -3' miRNA: 3'- aCAUCUCCcacUGCGCUUGCCGuCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 59903 | 0.76 | 0.348346 |
Target: 5'- --aGGAGGGcGGCGCGcGCGcGCGGCGa -3' miRNA: 3'- acaUCUCCCaCUGCGCuUGC-CGUCGC- -5' |
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6445 | 3' | -56.3 | NC_001847.1 | + | 131817 | 0.74 | 0.441345 |
Target: 5'- --cGGAGGccGGCGCcGGCGGCAGCGg -3' miRNA: 3'- acaUCUCCcaCUGCGcUUGCCGUCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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