miRNA display CGI


Results 1 - 20 of 161 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 3' -56.3 NC_001847.1 + 73171 0.66 0.891864
Target:  5'- --cGGAGGaGgcgGACGCG-GCGGCGGa- -3'
miRNA:   3'- acaUCUCC-Ca--CUGCGCuUGCCGUCgc -5'
6445 3' -56.3 NC_001847.1 + 32000 0.66 0.863206
Target:  5'- --gGGAGGG--ACGCGGGCGuGgAGCGc -3'
miRNA:   3'- acaUCUCCCacUGCGCUUGC-CgUCGC- -5'
6445 3' -56.3 NC_001847.1 + 86495 0.66 0.855504
Target:  5'- ---cGAGGcUG-CGgGGGCGGCGGCGc -3'
miRNA:   3'- acauCUCCcACuGCgCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 96924 0.66 0.855504
Target:  5'- cGUAGAGGcGcgcGGCccgggccuccGCGGGCGGCAGgCGc -3'
miRNA:   3'- aCAUCUCC-Ca--CUG----------CGCUUGCCGUC-GC- -5'
6445 3' -56.3 NC_001847.1 + 5528 0.66 0.863206
Target:  5'- -cUAGGGcGGcGACGCucguGACGGCGGCc -3'
miRNA:   3'- acAUCUC-CCaCUGCGc---UUGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 3521 0.66 0.863206
Target:  5'- gUGUAcGGGccGUGGCcgacuacggccGCGAgcGCGGCGGCGg -3'
miRNA:   3'- -ACAUcUCC--CACUG-----------CGCU--UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 34089 0.66 0.863206
Target:  5'- cGUGGcGGccgccGUGGCuCGcGCGGCGGCGg -3'
miRNA:   3'- aCAUCuCC-----CACUGcGCuUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 134813 0.66 0.863206
Target:  5'- --gGGAGGG--ACGCGGGCGuGgAGCGc -3'
miRNA:   3'- acaUCUCCCacUGCGCUUGC-CgUCGC- -5'
6445 3' -56.3 NC_001847.1 + 124684 0.66 0.891864
Target:  5'- --aGGAGGuGgaagagGACGCGGugGGCGaCGa -3'
miRNA:   3'- acaUCUCC-Ca-----CUGCGCUugCCGUcGC- -5'
6445 3' -56.3 NC_001847.1 + 102996 0.66 0.863206
Target:  5'- cGUcGcGGcGUG-CGCGGgcGCGGCGGCGc -3'
miRNA:   3'- aCAuCuCC-CACuGCGCU--UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 131760 0.66 0.866229
Target:  5'- uUGcGGAGGGcuuuGCGCGGcucggcgcgcggauuGCGGCGGCc -3'
miRNA:   3'- -ACaUCUCCCac--UGCGCU---------------UGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 96924 0.66 0.868474
Target:  5'- --gGGGGGGUG-CGCGuauAgcgggucgccgcuaGCGGCGGCa -3'
miRNA:   3'- acaUCUCCCACuGCGC---U--------------UGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 21934 0.66 0.891864
Target:  5'- --cGGAGGagagGAcCGCGGcucGCGGCGGCa -3'
miRNA:   3'- acaUCUCCca--CU-GCGCU---UGCCGUCGc -5'
6445 3' -56.3 NC_001847.1 + 21871 0.66 0.891864
Target:  5'- --aGGAGGuGgaagagGACGCGGugGGCGaCGa -3'
miRNA:   3'- acaUCUCC-Ca-----CUGCGCUugCCGUcGC- -5'
6445 3' -56.3 NC_001847.1 + 97626 0.66 0.885033
Target:  5'- cGUcGAGGGUG-CGUcca-GGCGGCGc -3'
miRNA:   3'- aCAuCUCCCACuGCGcuugCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 95773 0.66 0.877976
Target:  5'- -----cGGGccgcucUGGCGCGGGgGGCGGCGc -3'
miRNA:   3'- acaucuCCC------ACUGCGCUUgCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 73746 0.66 0.877976
Target:  5'- ---cGAGGGcaguuccaaGCGcCGGGCGGCGGCGc -3'
miRNA:   3'- acauCUCCCac-------UGC-GCUUGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 101873 0.66 0.877976
Target:  5'- --cGGAGGaGcucgccuuUGcGCGCGGaccGCGGCAGCGg -3'
miRNA:   3'- acaUCUCC-C--------AC-UGCGCU---UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 113924 0.66 0.870699
Target:  5'- --gAGAGGaagcagcGCGCGGucGCGGCGGCGu -3'
miRNA:   3'- acaUCUCCcac----UGCGCU--UGCCGUCGC- -5'
6445 3' -56.3 NC_001847.1 + 22331 0.66 0.870699
Target:  5'- --aAGAGGGUguuGACGuCGAugGcgaggcGCAGCGc -3'
miRNA:   3'- acaUCUCCCA---CUGC-GCUugC------CGUCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.