miRNA display CGI


Results 41 - 60 of 536 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 5669 0.67 0.645965
Target:  5'- gCGCGcCgUCgCGcGCGGCGgCGGCCGCc -3'
miRNA:   3'- -GCGCaGaAG-GC-CGCUGUgGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 6337 0.75 0.271045
Target:  5'- aCGCGggugccCCGGCGGCaACCGcGCCGCGg -3'
miRNA:   3'- -GCGCagaa--GGCCGCUG-UGGU-CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 6509 0.67 0.665806
Target:  5'- gGCGUCg-CCGGCG-CGCuCAGCCu-- -3'
miRNA:   3'- gCGCAGaaGGCCGCuGUG-GUCGGcgc -5'
6445 5' -60.1 NC_001847.1 + 6749 0.72 0.397078
Target:  5'- gGCGUCgucugcggugcggCCGGUgcgaGGCGCCAGCUGCu -3'
miRNA:   3'- gCGCAGaa-----------GGCCG----CUGUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 6959 0.7 0.518442
Target:  5'- gCGCGgggUCgCGGCGGCGCUuccgcccgcgGGCCGCc -3'
miRNA:   3'- -GCGCagaAG-GCCGCUGUGG----------UCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 7842 0.72 0.369691
Target:  5'- cCGUGUCUccggcaccgCCGGUGGCGCCugcagaggcGGCCGCc -3'
miRNA:   3'- -GCGCAGAa--------GGCCGCUGUGG---------UCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 8454 0.69 0.566759
Target:  5'- cCGgGUCgga-GGCGGCGCCGGgCCGgGg -3'
miRNA:   3'- -GCgCAGaaggCCGCUGUGGUC-GGCgC- -5'
6445 5' -60.1 NC_001847.1 + 9724 0.76 0.241325
Target:  5'- gCGgGUCcUCCGGCGGCGCCGgggcagucGCCGuCGg -3'
miRNA:   3'- -GCgCAGaAGGCCGCUGUGGU--------CGGC-GC- -5'
6445 5' -60.1 NC_001847.1 + 10044 0.66 0.734012
Target:  5'- cCGCGUUcgUCaCGGcCGACACgCGcgcgcugcGCCGCGc -3'
miRNA:   3'- -GCGCAGa-AG-GCC-GCUGUG-GU--------CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 10229 0.68 0.59631
Target:  5'- cCGCuGUCgcccCCGGCG-CGCCuGCCGgGc -3'
miRNA:   3'- -GCG-CAGaa--GGCCGCuGUGGuCGGCgC- -5'
6445 5' -60.1 NC_001847.1 + 10553 0.67 0.655894
Target:  5'- cCGCGcCcggCCGGCGccgggcccgGCGCCGGCgGCc -3'
miRNA:   3'- -GCGCaGaa-GGCCGC---------UGUGGUCGgCGc -5'
6445 5' -60.1 NC_001847.1 + 10593 0.68 0.586426
Target:  5'- cCGCG-CgcgCgGGcCGGCGCCGGcCCGCGc -3'
miRNA:   3'- -GCGCaGaa-GgCC-GCUGUGGUC-GGCGC- -5'
6445 5' -60.1 NC_001847.1 + 11655 0.67 0.665806
Target:  5'- gGCcccgCUUgCGGCGGCcCCAGCCGa- -3'
miRNA:   3'- gCGca--GAAgGCCGCUGuGGUCGGCgc -5'
6445 5' -60.1 NC_001847.1 + 12089 0.66 0.705114
Target:  5'- cCGCGgg-UCCGGCGcC-CgCGGCCGUa -3'
miRNA:   3'- -GCGCagaAGGCCGCuGuG-GUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 12667 0.66 0.743489
Target:  5'- aGCGgua--CGGCGACGCgaAGCUGCa -3'
miRNA:   3'- gCGCagaagGCCGCUGUGg-UCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 13055 0.69 0.576574
Target:  5'- uGCGUCUccucgucgCCGGCGuCGCCgaugAGCCGg- -3'
miRNA:   3'- gCGCAGAa-------GGCCGCuGUGG----UCGGCgc -5'
6445 5' -60.1 NC_001847.1 + 13109 0.69 0.547264
Target:  5'- cCGcCGUCcUCCu-CGGCugCGGCCGCGa -3'
miRNA:   3'- -GC-GCAGaAGGccGCUGugGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 13113 0.69 0.547264
Target:  5'- uCGCGgccggggCgcgCgGGCGGCGCCGcGCCGCc -3'
miRNA:   3'- -GCGCa------Gaa-GgCCGCUGUGGU-CGGCGc -5'
6445 5' -60.1 NC_001847.1 + 13652 0.66 0.705114
Target:  5'- uCGCG-CUgguucUCCGGCGcgguguggaacCACgAGCCGCGc -3'
miRNA:   3'- -GCGCaGA-----AGGCCGCu----------GUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 14137 0.71 0.453801
Target:  5'- gCGUGUC-UCCGGcCGGCuGCgCAGCgGCGg -3'
miRNA:   3'- -GCGCAGaAGGCC-GCUG-UG-GUCGgCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.