miRNA display CGI


Results 21 - 40 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 3080 0.73 0.346622
Target:  5'- aGCG-CgUCCGGCG-CGCaGGCCGCGg -3'
miRNA:   3'- gCGCaGaAGGCCGCuGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 3138 0.71 0.427459
Target:  5'- cCGgGagc-CCGGCGGCGCCGGCgGCGc -3'
miRNA:   3'- -GCgCagaaGGCCGCUGUGGUCGgCGC- -5'
6445 5' -60.1 NC_001847.1 + 3197 0.67 0.655894
Target:  5'- cCGcCGUCgccgccaucgCCGGCGcacgugccuccGCGCC-GCCGCGg -3'
miRNA:   3'- -GC-GCAGaa--------GGCCGC-----------UGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 3241 0.68 0.59631
Target:  5'- cCGCGcCgugcucgCCGGCGGCaggggcGCCGgcGCCGCGc -3'
miRNA:   3'- -GCGCaGaa-----GGCCGCUG------UGGU--CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 3410 0.66 0.710943
Target:  5'- aGCGggagagcagcCCGGgGGCGCCAGgCGCa -3'
miRNA:   3'- gCGCagaa------GGCCgCUGUGGUCgGCGc -5'
6445 5' -60.1 NC_001847.1 + 3473 0.68 0.620119
Target:  5'- aGCG-CgcgCCGGCG-CGCCgagagcucgcacaugAGCCGCGc -3'
miRNA:   3'- gCGCaGaa-GGCCGCuGUGG---------------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 3484 0.69 0.576574
Target:  5'- gGCGUCcccgaCCGGCGGCAgCGgcGCCGUc -3'
miRNA:   3'- gCGCAGaa---GGCCGCUGUgGU--CGGCGc -5'
6445 5' -60.1 NC_001847.1 + 3557 0.67 0.665806
Target:  5'- aCGCGcCgcugCagcaGGCG-CGCCAGCUGCa -3'
miRNA:   3'- -GCGCaGaa--Gg---CCGCuGUGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 3628 0.67 0.645965
Target:  5'- gGCGUCg--CGGCGcgcguACACCAgguccaccagcGCCGCGu -3'
miRNA:   3'- gCGCAGaagGCCGC-----UGUGGU-----------CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 3678 0.72 0.393789
Target:  5'- cCGCGUCccccaucUCCGGC-ACGaacaCGGCCGCGg -3'
miRNA:   3'- -GCGCAGa------AGGCCGcUGUg---GUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 3726 0.67 0.675691
Target:  5'- gCGCGcCggccaCGGCGcGCACgCGGCCGUGc -3'
miRNA:   3'- -GCGCaGaag--GCCGC-UGUG-GUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 3805 0.69 0.556987
Target:  5'- gGCGUg--CCGGCacggGGCGUCGGCCGCGa -3'
miRNA:   3'- gCGCAgaaGGCCG----CUGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 3960 0.71 0.426597
Target:  5'- gCGcCGUC-UCCGGCGGCgagggcgccggggGCCGGgCGCGc -3'
miRNA:   3'- -GC-GCAGaAGGCCGCUG-------------UGGUCgGCGC- -5'
6445 5' -60.1 NC_001847.1 + 4227 0.69 0.566759
Target:  5'- gCGCGgug-CCGGCGcGCGCCGGCacgaGCu -3'
miRNA:   3'- -GCGCagaaGGCCGC-UGUGGUCGg---CGc -5'
6445 5' -60.1 NC_001847.1 + 4484 0.68 0.616145
Target:  5'- cCGCGUCccuggcgCCGGCGuccuCGCCGaucuCCGCGu -3'
miRNA:   3'- -GCGCAGaa-----GGCCGCu---GUGGUc---GGCGC- -5'
6445 5' -60.1 NC_001847.1 + 4550 0.68 0.626083
Target:  5'- cCGCGUC-UCCGGCGccgucguccucGCugCucuCCGCGu -3'
miRNA:   3'- -GCGCAGaAGGCCGC-----------UGugGuc-GGCGC- -5'
6445 5' -60.1 NC_001847.1 + 4750 0.66 0.70414
Target:  5'- aGCGUggccagcucgagcCUgCCgGGCGACgacaugACCGGCCGUGg -3'
miRNA:   3'- gCGCA-------------GAaGG-CCGCUG------UGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 5337 0.67 0.675691
Target:  5'- gGCcgGUCggagCUGGCua-GCCGGCCGCGg -3'
miRNA:   3'- gCG--CAGaa--GGCCGcugUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 5393 0.77 0.194707
Target:  5'- aGCGg---CCGGCGGCACaGGCCGCGc -3'
miRNA:   3'- gCGCagaaGGCCGCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 5459 0.71 0.43614
Target:  5'- gCGCGUCccggCCgcucucugcggcGGCGGCAgCGGCCGCc -3'
miRNA:   3'- -GCGCAGaa--GG------------CCGCUGUgGUCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.