miRNA display CGI


Results 21 - 40 of 536 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6445 5' -60.1 NC_001847.1 + 100751 0.75 0.264874
Target:  5'- cCGCGUCUgCC-GCGGCGgCGGCCGCc -3'
miRNA:   3'- -GCGCAGAaGGcCGCUGUgGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 56853 0.75 0.264874
Target:  5'- gCGcCGUCUgcgcCCGGCGGC-CCGGgCGCGg -3'
miRNA:   3'- -GC-GCAGAa---GGCCGCUGuGGUCgGCGC- -5'
6445 5' -60.1 NC_001847.1 + 82609 0.75 0.270423
Target:  5'- cCGCGcCcUCCGGCGACcaucccccgggccGCgCGGCCGCGc -3'
miRNA:   3'- -GCGCaGaAGGCCGCUG-------------UG-GUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 103913 0.75 0.271045
Target:  5'- cCGCGgccgCgGGCGGCGCC-GCCGCGg -3'
miRNA:   3'- -GCGCagaaGgCCGCUGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 6337 0.75 0.271045
Target:  5'- aCGCGggugccCCGGCGGCaACCGcGCCGCGg -3'
miRNA:   3'- -GCGCagaa--GGCCGCUG-UGGU-CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 1100 0.75 0.271045
Target:  5'- cCGCGgccgCgGGCGGCGCC-GCCGCGg -3'
miRNA:   3'- -GCGCagaaGgCCGCUGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 53950 0.75 0.271045
Target:  5'- aCGCG-CgcgCCGGCuGGCGCC-GCCGCGa -3'
miRNA:   3'- -GCGCaGaa-GGCCG-CUGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 52124 0.75 0.273546
Target:  5'- cCGCGgg--CCGGCGGCGCCccagcggaccgacgaGGCCGUGg -3'
miRNA:   3'- -GCGCagaaGGCCGCUGUGG---------------UCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 30782 0.75 0.277332
Target:  5'- gCGCGUCUgCgGGCgcgGACGCC-GCCGCGu -3'
miRNA:   3'- -GCGCAGAaGgCCG---CUGUGGuCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 44901 0.75 0.277332
Target:  5'- gCGCGUCacagCC-GCGGCGgCGGCCGCGa -3'
miRNA:   3'- -GCGCAGaa--GGcCGCUGUgGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 84617 0.74 0.283734
Target:  5'- uGCGUCgccUUCGaGCGGgGCCAuGCCGCGg -3'
miRNA:   3'- gCGCAGa--AGGC-CGCUgUGGU-CGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 81172 0.74 0.283734
Target:  5'- cCGCGccgCUcggagggcUCgCGGCGGCGCCAGCCgGCGc -3'
miRNA:   3'- -GCGCa--GA--------AG-GCCGCUGUGGUCGG-CGC- -5'
6445 5' -60.1 NC_001847.1 + 17067 0.74 0.296887
Target:  5'- gGCGguaaaCggCCGGCG-UGCCAGCCGCGu -3'
miRNA:   3'- gCGCa----GaaGGCCGCuGUGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 116443 0.74 0.303639
Target:  5'- cCGCGgcgCUggCGGUGACGCgGGCCGUGc -3'
miRNA:   3'- -GCGCa--GAagGCCGCUGUGgUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 51898 0.74 0.303639
Target:  5'- cCGCG-CUUUCGGCcgccGCcCCGGCCGCGg -3'
miRNA:   3'- -GCGCaGAAGGCCGc---UGuGGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 38656 0.74 0.310509
Target:  5'- cCGCGUUgccgUGGCGACGCCcGCCGCc -3'
miRNA:   3'- -GCGCAGaag-GCCGCUGUGGuCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 103988 0.74 0.310509
Target:  5'- gGCGUCgacgCCGcccGCGAagGCCAGCCGCa -3'
miRNA:   3'- gCGCAGaa--GGC---CGCUg-UGGUCGGCGc -5'
6445 5' -60.1 NC_001847.1 + 86185 0.74 0.317497
Target:  5'- aGCGUCUgacggcaCCGGgGGCGguCCAGUCGCGc -3'
miRNA:   3'- gCGCAGAa------GGCCgCUGU--GGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 73709 0.73 0.324602
Target:  5'- cCGCGc---CCGGCGGCG-CGGCCGCGg -3'
miRNA:   3'- -GCGCagaaGGCCGCUGUgGUCGGCGC- -5'
6445 5' -60.1 NC_001847.1 + 55449 0.73 0.324602
Target:  5'- aGCGcCUggcgCCGGCGgggcgcgcgccGCGCUAGCCGCu -3'
miRNA:   3'- gCGCaGAa---GGCCGC-----------UGUGGUCGGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.